Information on SUBCLASS 6.7.1 |
Subclass Accession number: 8648
Subclass: 6.7.1 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 8 Average sequence ID (%) : 11.4 +/- 12.5 Average RMSD (Å) : 0.925 +/- 0.306 Consensus geometry
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Consensus Sequence: | pXhXXXhXXh |
(φψ)-conformation: | aalppbppbb |
Pattern: | [efkr] | x | [cqrt] | x | x | x | x | [aflm] | [ADKRST] | [deknrs] | x | [gm] | [iklmv] | [aep] | [AILTV] | [agpw] | x | x | [fgilwy] | [AILTV] |
Conservation: | -0.031 | -1.292 | -0.165 | -0.867 | -0.477 | -0.616 | -0.858 | 0.548 | 0.297 | -0.199 | -1.097 | 2.613 | 0.196 | 1.596 | 1.066 | -0.246 | -0.626 | -0.598 | -0.605 | 1.361 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1b6r_A_80 | 1b6r | A | 80 | 99 | RLTQKQLFDKLHLPTAPWQL | HHHHHHHHHHHT--B--EEE | aaaaaaaaaaavxxbxpbbx |
1c30_A_129 | 1c30 | A | 129 | 148 | RRRFDVAMKKIGLETARSGI | HHHHHHHHHHTT----SEEE | aaaaaaaaaaavbxbxxbbx |
1e4e_A_133 | 1e4e | A | 133 | 152 | KSLTYIVAKNAGIATPAFWV | HHHHHHHHHHTT-B---EEE | aaaaaaaaaaavxxbxxbbx |
1euc_B_5 | 1euc | B | 5 | 24 | EYQSKKLMSDNGVKVQRFFV | HHHHHHHHHTTT-----EEE | aaaaaaaaaaavxxbpxbbb |
1ja1_A_538 | 1ja1 | A | 543 | 562 | FIQERAWLREQGKEVGETLL | HHHHHHHHHHTT-----EEE | aaaaaaaaaaavxxbxxbbb |
1kbl_A_16 | 1kbl | A | 22 | 41 | KGCNLAEMTILGMPIPQGFT | HHHHHHHHHHTT-----EEE | aaaaaaaaaaavxxbxxbbb |
1ryp_2_81 | 1ryp | 2 | 88 | 107 | LATVMYQRRSKMNPLWNAII | HHHHHHHHHHTT----EEEE | aaaaaaaaaaavbxxxbbbb |
2scu_B_5 | 2scu | B | 5 | 24 | EYQAKQLFARYGLPAPVGYA | HHHHHHHHHHTT-----EEE | aaaaaaaaaaavxxbxxbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1c30_A_129 | 1c30 | A | MNMANGANESE (II) ION | R - 129 |
1c30_A_129 | 1c30 | A | ADPADENOSINE-5'-DIPHOSPHATE | R - 129 |
1c30_A_129 | 1c30 | A | ADPADENOSINE-5'-DIPHOSPHATE | A - 144 |
1e4e_A_133 | 1e4e | A | ADPADENOSINE-5'-DIPHOSPHATE | K - 133 |
1e4e_A_133 | 1e4e | A | MGMAGNESIUM ION | K - 133 |
1e4e_A_133 | 1e4e | A | ADPADENOSINE-5'-DIPHOSPHATE | Y - 137 |
1e4e_A_133 | 1e4e | A | ADPADENOSINE-5'-DIPHOSPHATE | P - 148 |
1ja1_A_538 | 1ja1 | A | FADFLAVIN-ADENINE DINUCLEOTIDE | A - 538 |
1ja1_A_538 | 1ja1 | A | FADFLAVIN-ADENINE DINUCLEOTIDE | P - 539 |
1ja1_A_538 | 1ja1 | A | NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | G - 565 |
1ja1_A_538 | 1ja1 | A | NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | C - 566 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1e4e_A_133 | 1e4e | A | AC3ADP BINDING SITE FOR CHAIN A | K - 133 |
Clusters included in this Subclass |
CLUSTER: HE.6.94 |
CLUSTER: HE.7.114 |
CLUSTER: HE.7.115 |
CLUSTER: HE.8.58 |