Information on SUBCLASS 6.25.1 |
Subclass Accession number: 8669
Subclass: 6.25.1 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 34.3 +/- 27.8 Average RMSD (Å) : 0.275 +/- 0.096 Consensus geometry
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Consensus Sequence: | XpDXpXpKhc |
(φψ)-conformation: | aapapaapbb |
Pattern: | [FL] | [GK] | [ILV] | [IKT] | [AEQ] | [ADR] | [FY] | [GKR] | [EQR] | [D] | [GPQT] | [DNR] | [APS] | [KRT] | [K] | [MV] | [DN] |
Conservation: | 0.400 | -0.253 | 0.109 | -1.047 | -0.613 | -1.158 | 1.422 | -0.666 | -0.072 | 2.190 | -1.327 | -0.481 | -0.594 | -0.461 | 1.572 | 0.196 | 0.785 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ajs_A_16 | 1ajs | A | 18 | 34 | FKLIADFREDPDPRKVN | HHHHHHHHT---TT-EE | aaaaaaaaaxapaapbx |
1yaa_A_18 | 1yaa | A | 18 | 34 | FGIKQRYGQDQRATKVD | HHHHHHHHT---SS-EE | aaaaaaaaabapaabbb |
2cst_A_16 | 2cst | A | 18 | 34 | FKLTADFREDGDSRKVN | HHHHHHHHH---TT-EE | aaaaaaaaaxaxaapbb |
7aat_A_16 | 7aat | A | 18 | 34 | LGVTEAFKRDTNSKKMN | HHHHHHHHH---TT-EE | aaaaaaaaapaxaapbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ajs_A_16 | 1ajs | A | PLA2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-2-METHYL-SUCCINIC ACID | V - 17 |
1ajs_A_16 | 1ajs | A | PLA2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-2-METHYL-SUCCINIC ACID | F - 18 |
1yaa_A_18 | 1yaa | A | MAEMALEIC ACID | F - 18 |
2cst_A_16 | 2cst | A | MAEMALEIC ACID | V - 17 |
Clusters included in this Subclass |
CLUSTER: HE.6.122 |