Information on SUBCLASS 10.2.1 |
Subclass Accession number: 8745
Subclass: 10.2.1 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 6 Average sequence ID (%) : 59.4 +/- 26.1 Average RMSD (Å) : 0.750 +/- 0.481 Consensus geometry
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Consensus Sequence: | GcXpGCXPKXXXYp |
(φψ)-conformation: | aapbgbbaaappbb |
Pattern: | [AR] | [CT] | [CD] | [QR] | [CT] | [CH] | [f] | [NV] | [CH] | [DY] | [CG] | [AC] | [GY] | [EG] | [GKR] | [SV] | [KRT] | [G] | [C] | [ADN] | [P] | [K] | [lmw] | [ADR] | [itv] | [Y] | [ST] | [FY] | [QS] | [cfvw] | [DEKQS] |
Conservation: | -0.503 | -0.055 | -0.314 | 0.117 | 0.397 | 0.159 | -0.515 | -0.875 | 0.046 | -0.448 | 0.025 | 0.550 | -0.335 | -0.179 | -0.742 | -0.789 | -0.568 | 1.461 | 2.861 | -0.721 | 1.928 | 0.995 | -1.017 | -1.052 | -1.053 | 1.928 | 0.005 | 1.085 | -0.283 | -1.423 | -0.689 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1jia_A_40 | 1jia | A | 40 | 70 | ATDRCCFVHDCCYEKVTGCDPKWDDYTYSWK | HHHHHHHHHHHHHHT--SS-TTTS---EEEE | aaaaaaaaaaaaaaaxbgbxaaaxxbbbbbb |
1jlt_B_40 | 1jlt | B | 40 | 70 | ATDRCCFVHDCCYGRVRGCNPKLAIYSYSFK | HHHHHHHHHHHHHHT--SS-TTT----EEEE | aaaaaaaaaaaaaaaxbgbxaaaxbbxbbxb |
1m8r_A_40 | 1m8r | A | 40 | 70 | ATDRCCFVHDCCYGKVTGCDPKMDVYSFSEE | HHHHHHHHHHHHHHT--SS-TTT---EEEEE | aaaaaaaaaaaaaaaxbgbbaaaxxbbbbbb |
1oqs_B_40 | 1oqs | B | 40 | 70 | ATDRCCFVHDCCYGGVKGCNPKLAIYSYSFQ | HHHHHHHHHHHHHHT--SS-TTT----EEEE | aaaaaaaaaaaaaaaxbvbbaaaxbbbbbbb |
1ows_B_40 | 1ows | B | 43 | 73 | RCCQTHDNCYGAGGGSTGCAPKSRTYTYQCS | HHHHHHHHHHHHHHTSTT--TTT----EEEE | aaaaaaaaaaaaaaaxpUxbaaaxxbbbbbb |
1vap_A_39 | 1vap | A | 39 | 69 | ATDRCCFVHDCCYGKVTGCNPKMDIYTYSVD | HHHHHHHHHHHHHHT--SS-TTT----EEEE | aaaaaaaaaaaaaaaxbvbbaaaxxbbbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1jia_A_40 | 1jia | A | CACALCIUM ION | C - 45 |
1jia_A_40 | 1jia | A | CACALCIUM ION | D - 49 |
1jlt_B_40 | 1jlt | B | MPD2-METHYL-2,4-PENTANEDIOL | C - 45 |
1jlt_B_40 | 1jlt | B | MPD2-METHYL-2,4-PENTANEDIOL | H - 48 |
1jlt_B_40 | 1jlt | B | MPD2-METHYL-2,4-PENTANEDIOL | D - 49 |
1jlt_B_40 | 1jlt | B | MPD2-METHYL-2,4-PENTANEDIOL | Y - 52 |
1m8r_A_40 | 1m8r | A | CDCADMIUM ION | C - 45 |
1m8r_A_40 | 1m8r | A | BU11,4-BUTANEDIOL | C - 45 |
1m8r_A_40 | 1m8r | A | CDCADMIUM ION | F - 46 |
1m8r_A_40 | 1m8r | A | BU11,4-BUTANEDIOL | H - 48 |
1m8r_A_40 | 1m8r | A | CDCADMIUM ION | D - 49 |
1m8r_A_40 | 1m8r | A | BU11,4-BUTANEDIOL | D - 49 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1jia_A_40 | 1jia | A | ATAACTIVE SITE. | H - 48 |
Clusters included in this Subclass |
CLUSTER: HE.12.6 |
CLUSTER: HE.14.6 |