ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 12.3.1

Subclass Accession number: 8763
Subclass: 12.3.1

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 5

Average sequence ID (%) : 44.6 +/- 23.7
Average RMSD (Å) : 0.500 +/- 0.122

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	hFpcppCXSLXcKPKh
(φψ)-conformation:	aapaaabaaaplbwbb

Pattern:	[ILV]	[EKNQ]	[ADEK]	[ILV]	[FTV]	[ANQ]	[FHILM]	[FL]	[DNR]	[GNT]	[ADKT]	[NRS]	[CS]	[KPR]	[ST]	[L]	[gklt]	[DEGN]	[K]	[P]	[K]	[LMV]	[FI]	[FI]	[I]	[Q]
Conservation:	-0.020	-0.489	-0.961	0.113	-0.949	-0.757	-1.122	0.381	-0.526	-0.620	-1.244	-0.493	1.004	-0.461	0.100	0.789	-1.735	-0.767	1.379	2.559	1.379	-0.150	0.381	0.042	0.789	1.379

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bmq_A_258	1bmq	A	258	283	LNAIFNMLNTKNCPSLKDKPKVIIIQ	HHHHHHHTSTTT-TTSTTS-EEEEEE	aaaaaaaaxaaabaaapvbpbxbbbb
1f1j_A_159	1f1j	A	159	184	IKDLTAHFRGDRSKTLLEKPKLFFIQ	HHHHHHTTSTTT-GGGTTS-EEEEEE	aaaaaaaapaaabaaaxvbwbbbbbb
1nme_A_136	1nme	A	136	161	LKKITNFFRGDRCRSLTGKPKLFIIQ	HHHHHHTTSTTT-GGGTTS-EEEEEE	aaaaaaaapaaabaaapvbwbbbbbb
1nw9_B_260	1nw9	B	260	285	VEKIVNIFNGTSCPSLGGKPKLFFIQ	HHHHHHTT-TTT-GGGTTS-EEEEEE	aaaaaaaaxaaabaaaxvbwbxbbbb
1pyo_A_128	1pyo	A	128	153	LQEVFQLFDNANCPSLQNKPKMFFIQ	HHHHHHHTSTTT-GGGTTS-EEEEEE	aaaaaaaaxaaabaaapvbwbbbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1bmq_A_258	1bmq	A	MNO(3S)-N-METHANESULFONYL-3-({1-[N-(2-NAPHTOYL)-L-VALYL]-L-PROLYL}AMINO)-4-OXOBUTANAMIDE	Q - 283
1nme_A_136	1nme	A	1583-(2-MERCAPTO-ACETYLAMINO)-4-OXO-PENTANOIC ACID	Q - 161

Clusters included in this Subclass