Information on SUBCLASS 16.1.1 |
Subclass Accession number: 8774
Subclass: 16.1.1 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 29.6 +/- 24.3 Average RMSD (Å) : 0.625 +/- 0.287 Consensus geometry
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Consensus Sequence: | phGpXXXXXXXXphpNpphh |
(φψ)-conformation: | aagbappabpaaaaaapabb |
Pattern: | [AGS] | x | x | [EPQ] | [ST] | [FVWY] | [G] | [ENR] | [GQ] | [AT] | x | [STV] | [NP] | x | x | x | [DE] | [ILW] | [DKY] | [N] | [AST] | [DNS] | [LVY] | [IV] | [FILM] | [AMV] | [FMW] |
Conservation: | -0.248 | -0.616 | -0.936 | -0.056 | 0.440 | -0.224 | 2.793 | -0.277 | 0.118 | 0.114 | -0.452 | -0.536 | 0.279 | -0.503 | -1.022 | -1.321 | 1.469 | -0.574 | -1.059 | 2.793 | -0.116 | 0.153 | -0.528 | 0.965 | -0.270 | -0.431 | 0.045 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1aa6_*_142 | 1aa6 | - | 147 | 173 | GLHQSVGNGAMSNAINEIDNTDLVFVF | HHHHHHS--S-SS-GGGGGG-SEEEEE | aaaaaavbaxxabxaaaaaaxabbbxb |
1h0h_A_160 | 1h0h | A | 165 | 191 | ALAESYGRGAMTNHWIDLKNSDVILMM | HHHHHHS--S-SS-TGGGGG-SEEEEE | aaaaaagbaxpabbaaaaaaxabbbbb |
1kqf_A_198 | 1kqf | A | 203 | 229 | SLAPTFGRGAMTNHWVDIKNANVVMVM | HHHHHHS--S-SS-TGGGGG-SEEEEE | aaaaaagbaxpabbaaaaaaxabbbbb |
1q16_A_226 | 1q16 | A | 226 | 252 | ASPQTWGEQTDVPESADWYNSSYIIAW | HHHHHHS-S-----GGGGGG-SEEEEE | aaaaaavbabbbxxaaaaaaxabbbxb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1aa6_*_142 | 1aa6 | * | CSESELENOCYSTEINE | G - 142 |
1aa6_*_142 | 1aa6 | * | CSESELENOCYSTEINE | S - 144 |
1aa6_*_142 | 1aa6 | * | MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE | F - 173 |
1h0h_A_160 | 1h0h | A | CSESELENOCYSTEINE | S - 160 |
1h0h_A_160 | 1h0h | A | SSULFUR ATOM | S - 160 |
1h0h_A_160 | 1h0h | A | CACALCIUM ION | S - 160 |
1h0h_A_160 | 1h0h | A | CSESELENOCYSTEINE | A - 161 |
1h0h_A_160 | 1h0h | A | SSULFUR ATOM | A - 161 |
1h0h_A_160 | 1h0h | A | CSESELENOCYSTEINE | T - 162 |
1h0h_A_160 | 1h0h | A | SSULFUR ATOM | T - 162 |
1h0h_A_160 | 1h0h | A | MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE | M - 191 |
1kqf_A_198 | 1kqf | A | CSESELENOCYSTEINE | G - 198 |
1kqf_A_198 | 1kqf | A | CSESELENOCYSTEINE | P - 199 |
1kqf_A_198 | 1kqf | A | CSESELENOCYSTEINE | T - 200 |
1kqf_A_198 | 1kqf | A | MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE | M - 229 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1h0h_A_160 | 1h0h | A | 3APUTATIVE CO2 CHANNEL | R - 172 |
Clusters included in this Subclass |
CLUSTER: HE.15.5 |