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Information on SUBCLASS 1.2.6
Subclass Accession number: 8828
Subclass: 1.2.6 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 12

Average sequence ID (%) : 19.2 +/- 20.5
Average RMSD (Å) : 0.483 +/- 0.140

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXpPp
(φψ)-conformation: aabaa
Pattern: [ADPQST][deqrsty]x[filw][adegnq][fgly][AFLVW]xx[deknqr][NP][AEGNS]x[ailmvw][dhpr][ADNQRT][AFGLV][aclmtv]
Conservation:0.026-0.371-0.765-0.134-0.350-0.6240.049-0.491-0.653-0.4133.7460.775-0.2680.129-0.377-0.027-0.188-0.066
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b79_A_291b79   A3451QSVLGGLMLDNERWDDVAHHHHHHHHH-GGGHHHHHaaaaaaaaabaaaaaaaa
1cpt_*_2871cpt   -287304PEQLALAKSDPALIPRLVHHHHHHHHH-GGGHHHHHaaaaaaaaabaaaaaaaa
1dgf_A_1791dgf   A180197DMVWDFWSLRPESLHQVSHHHHHHHHH-GGGHHHHHaaaaaaaaabaaaaaaaa
1e93_A_1581e93   A159176AYKWDFFSHLPESLHQLTHHHHHHHHT-GGGHHHHHaaaaaaaaabaaaaaaaa
1gwe_A_1641gwe   A165182TMQWDFWTNNPESAHQVTHHHHHHHHT-GGGHHHHHaaaaaaaaabwaaaaaaa
1jip_A_2611jip   A261278PDQLALVRRDPSALPNAVHHHHHHHHH-GGGHHHHHaaaaaaaaabaaaaaaaa
1m7s_A_1811m7s   A182199SRRFDFFSHVPEATRTLTHHHHHHHHT-GGGHHHHHaaaaaaaaabaaaaaaaa
1n40_A_2531n40   A253270PQLRNLLHEKPELIPAGVHHHHHHHHH-GGGHHHHHaaaaaaaaabaaaaaaaa
1p80_A_2371p80   A237254DTFWDYVSLQPETLHNVMHHHHHHHHH-GGGHHHHHaaaaaaaaabaaaaaaaa
1q5d_A_2741q5d   A274291PEALELVKAEPGLMRNALHHHHHHHHH-GGGHHHHHaaaaaaaaabaaaaaaaa
1qmq_A_2681qmq   A268285PEHRQELIERPERIPAACHHHHHHHHH-GGGHHHHHaaaaaaaaabaaaaaaaa
1qsa_A_1851qsa   A188205ASAIISLANNPNTVLTFAHHHHHHHHH-GGGHHHHHaaaaaaaaabaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cpt_*_2871cpt   *     HEMPROTOPORPHYRIN IX CONTAINING FE V - 308
1dgf_A_1791dgf   A     ACTACETATE ION V - 182
1dgf_A_1791dgf   A     ACTACETATE ION W - 186
1dgf_A_1791dgf   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE H - 194
1dgf_A_1791dgf   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE S - 197
1dgf_A_1791dgf   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE F - 198
1dgf_A_1791dgf   A     ACTACETATE ION L - 199
1jip_A_2611jip   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 282
1n40_A_2531n40   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 274
1q5d_A_2741q5d   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 295
1qmq_A_2681qmq   A     ACTACETATE ION P - 268
1qmq_A_2681qmq   A     ACTACETATE ION E - 269
1qmq_A_2681qmq   A     ACTACETATE ION H - 270
1qmq_A_2681qmq   A     ACTACETATE ION R - 271
1qmq_A_2681qmq   A     ACTACETATE ION Q - 272
1qmq_A_2681qmq   A     ACTACETATE ION I - 275
1qmq_A_2681qmq   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 289
1qsa_A_1851qsa   A     GOLGLYCEROL I - 187

Clusters included in this Subclass
CLUSTER: HH.4.30
CLUSTER: HH.5.141
CLUSTER: HH.6.53