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Information on SUBCLASS 1.2.7
Subclass Accession number: 8829
Subclass: 1.2.7 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 12

Average sequence ID (%) : 12.5 +/- 19.9
Average RMSD (Å) : 0.458 +/- 0.124

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XXphp
(φψ)-conformation: aabaa
Pattern: xxxx[dehqy]x[deknry]xx
Conservation:-0.464-0.919-0.5550.0541.8251.3440.355-0.721-0.920
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8h_*_4231a8h   -426434LFKKEPEEAHHHH-HHHHaaaabaaaa
1bbu_A_1641bbu   A164172ARYRQRYLDHHHH-HHHHaaaabaaaa
1dgf_A_4721dgf   A482490FTEVHPDYGHHHH-HHHHaaaabaaaa
1e1o_A_1641e1o   A164172VRYRQRYLDHHHHTHHHHaaaabaaaa
1g12_A_1341g12   A141149LATMDPDKAHHHH-HHHHaaaabaaaa
1ll2_A_1931ll2   A193201SIYSYLPAFHHHHTHHHHaaaabaaaa
1lt8_A_481lt8   A4856AAVEHPEAVHHHH-HHHHaaaabaaaa
1m7s_A_4691m7s   A479487LYKEDPNYGHHHH-HHHHaaaabaaaa
1od2_A_14901od2   A14901498KEWLQPKRYHHHH-HHHHaaaabaaaa
1od4_A_14901od4   A14901498KEWLQPKRYHHHHSHHHHaaaabaaaa
1q44_A_2281q44   A230238ELKKQTEVEHHHHTHHHHaaaabaaaa
1sch_A_141sch   A2533AVAKEARMGHHHH-THHHaaaabaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1od2_A_14901od2   A     MSESELENOMETHIONINE Y - 1498
1od2_A_14901od2   A     MSESELENOMETHIONINE K - 1499
1od2_A_14901od2   A     MSESELENOMETHIONINE A - 1500
1od2_A_14901od2   A     MSESELENOMETHIONINE H - 1501
1sch_A_141sch   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 31
1sch_A_141sch   A     CACALCIUM ION R - 31
1sch_A_141sch   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 33
1sch_A_141sch   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 34
1sch_A_141sch   A     CACALCIUM ION A - 34
1sch_A_141sch   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 35
1sch_A_141sch   A     CACALCIUM ION S - 35
1sch_A_141sch   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 36
1sch_A_141sch   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 37
1sch_A_141sch   A     CACALCIUM ION L - 37
1sch_A_141sch   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 38
1sch_A_141sch   A     CACALCIUM ION R - 38
1sch_A_141sch   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 41
1sch_A_141sch   A     CACALCIUM ION F - 41
1sch_A_141sch   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 42
1sch_A_141sch   A     CACALCIUM ION H - 42
1sch_A_141sch   A     CACALCIUM ION D - 43
1sch_A_141sch   A     CACALCIUM ION C - 44
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1sch_A_141sch   A ADHDISTAL HEME POCKET.R - 38
1sch_A_141sch   A ADHDISTAL HEME POCKET.F - 41
1sch_A_141sch   A ADHDISTAL HEME POCKET.H - 42
1sch_A_141sch   A ADCDISTAL CATION SITE; GLU 64 MEDIATED THROUGH SOLVENT.D - 43

Clusters included in this Subclass
CLUSTER: HH.1.33
CLUSTER: HH.2.48