ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.1.9

Subclass Accession number: 8891
Subclass: 2.1.9

PSSM

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 13

Average sequence ID (%) : 13.9 +/- 24.2
Average RMSD (Å) : 0.562 +/- 0.176

Consensus geometry

d (Å): 9

delta (°): 0-45

theta (°): 45-90

rho (°): 270-315

Consensus Sequence:	XXhpXX
(φψ)-conformation:	aappaa

Pattern:	x	x	x	x	x	x	x	x	x	x	x	x
Conservation:	-0.003	-0.355	-1.195	-0.299	-0.770	2.262	0.802	-1.112	0.244	0.307	0.955	-0.838

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a49_A_370	1a49	A	383	394	EAEAAMFHRKLF	HHHHSS-HHHHH	aaaaaxbaaaaa
1aqf_E_370	1aqf	E	383	394	EAEAAMFHRKLF	HHHHTS-HHHHH	aaaaaxbaaaaa
1coj_A_177	1coj	A	183	194	AFFKNINWDVVN	HHHHTBBHHHHH	aaaaaxxaaaaa
1d0q_A_7	1d0q	A	12	23	AIRRGVDIVDVI	HHHHH--HHHHH	aaaaabbaaaaa
1d8w_A_355	1d8w	A	358	369	LRALLEPTAELR	HHHHTS-HHHHH	aaaaaxxaaaaa
1din_*_78	1din	-	86	97	KLWQAFDMEAGV	HHHHT--HHHHH	aaaaaxxaaaaa
1djx_A_203	1djx	A	205	216	YKMLTQRAEIDR	HHHHT--HHHHH	aaaaabbaaaaa
1ih7_A_856	1ih7	A	861	872	DVLHWMDYTVLL	HHHHHB-HHHHH	aaaaapxaaaaa
1itk_A_52	1itk	A	54	65	EEFQKLDLEAVK	HHHHH--HHHHH	aaaaaxxaaaaa
1liu_A_414	1liu	A	427	438	EAEAAVYHRQLF	HHHHH--HHHHH	aaaaaxxaaaaa
1lix_B_414	1lix	B	427	438	EAEAAVYHRQLF	HHHHT--HHHHH	aaaaaxxaaaaa
1pkl_A_339	1pkl	A	352	363	EAQSALNEYVFF	HHHHH--HHHHH	aaaaaxxaaaaa
2cb5_A_36	2cb5	A	36	47	LLDICLKRATVQ	HHHHHB-HHHHH	aaaaapxaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1d8w_A_355	1d8w	A	MSESELENOMETHIONINE	K - 355
1d8w_A_355	1d8w	A	MSESELENOMETHIONINE	A - 356
1d8w_A_355	1d8w	A	MSESELENOMETHIONINE	L - 357
1d8w_A_355	1d8w	A	MSESELENOMETHIONINE	L - 358
1d8w_A_355	1d8w	A	MSESELENOMETHIONINE	E - 372
1din_*_78	1din	*	CSD3-SULFINOALANINE	W - 88

Clusters included in this Subclass

CLUSTER: HH.2.51

CLUSTER: HH.3.49

CLUSTER: HH.4.71