Information on SUBCLASS 2.2.8 |
Subclass Accession number: 8924
Subclass: 2.2.8 Type: HH alpha-alpha DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 14.3 +/- 14.1 Average RMSD (Å) : 0.675 +/- 0.377 Consensus geometry
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Consensus Sequence: | XhGppp |
(φψ)-conformation: | aalpaa |
Pattern: | x | x | x | x | x | [CKM] | [AL] | x | x | [GLPT] | [GK] | [DQT] | x | x | [AL] | x | x | x | [FHL] | x | [EQT] |
Conservation: | -0.160 | -0.466 | -0.773 | -0.927 | 0.166 | 0.195 | 1.434 | 0.380 | -1.157 | -1.310 | 2.423 | 1.083 | -0.773 | -0.313 | 1.522 | -0.260 | -1.157 | -0.580 | 0.205 | -0.484 | 0.951 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1d8w_A_365 | 1d8w | A | 365 | 385 | TAELRKLEAPGDYTARLALLE | HHHHHHHHTTT-HHHHHHHHH | aaaaaaaaaavxaaaaaaaaa |
1ixm_A_48 | 1ixm | A | 62 | 82 | AKHESKLSNLKTPHLAFDFLT | HHHHHHHHTTT-HHHHHHHHH | aaaaaaaaaalbaaaaaaaaa |
1p4d_A_88 | 1p4d | A | 88 | 108 | KSVSMMAMLGGDKRLIDAHNQ | HHHHHHHHTS--THHHHHHHH | aaaaaaaaaaUxaaaaaaaaa |
3ygs_P_70 | 3ygs | P | 72 | 92 | PLFISCLEDTGQDMLASFLRT | HHHHHHHHTTT-HHHHHHHHH | aaaaaaaaaavxaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1d8w_A_365 | 1d8w | A | MSESELENOMETHIONINE | E - 372 |
1d8w_A_365 | 1d8w | A | MSESELENOMETHIONINE | Y - 377 |
1d8w_A_365 | 1d8w | A | MSESELENOMETHIONINE | R - 380 |
1p4d_A_88 | 1p4d | A | EGLETHYLENE GLYCOL | K - 100 |
1p4d_A_88 | 1p4d | A | EGLETHYLENE GLYCOL | R - 101 |
1p4d_A_88 | 1p4d | A | EGLETHYLENE GLYCOL | L - 102 |
1p4d_A_88 | 1p4d | A | EGLETHYLENE GLYCOL | I - 103 |
1p4d_A_88 | 1p4d | A | EGLETHYLENE GLYCOL | D - 104 |
1p4d_A_88 | 1p4d | A | EGLETHYLENE GLYCOL | A - 105 |
1p4d_A_88 | 1p4d | A | EGLETHYLENE GLYCOL | N - 107 |
1p4d_A_88 | 1p4d | A | EGLETHYLENE GLYCOL | Q - 108 |
1p4d_A_88 | 1p4d | A | EGLETHYLENE GLYCOL | V - 110 |
1p4d_A_88 | 1p4d | A | EGLETHYLENE GLYCOL | D - 111 |
1p4d_A_88 | 1p4d | A | EGLETHYLENE GLYCOL | F - 112 |
1p4d_A_88 | 1p4d | A | EGLETHYLENE GLYCOL | V - 114 |
1p4d_A_88 | 1p4d | A | EGLETHYLENE GLYCOL | R - 115 |
1p4d_A_88 | 1p4d | A | EGLETHYLENE GLYCOL | Q - 116 |
1p4d_A_88 | 1p4d | A | EGLETHYLENE GLYCOL | E - 118 |
Clusters included in this Subclass |
CLUSTER: HH.3.164 |
CLUSTER: HH.5.152 |