ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.5.1

Subclass Accession number: 8960
Subclass: 2.5.1

PSSM

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 20

Average sequence ID (%) : 28.8 +/- 22.7
Average RMSD (Å) : 0.570 +/- 0.264

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 45-90

rho (°): 45-90

Consensus Sequence:	pXGGXX
(φψ)-conformation:	aageaa

Pattern:	[afilvy]	[aekm]	[adekqrt]	x	[G]	[AG]	[ilmptv]	[adekqrst]	[aegkqrs]	[ACFILMV]	x
Conservation:	-0.368	-0.219	-0.453	-0.611	2.234	1.693	-0.478	-0.473	-0.531	0.011	-0.805

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bjn_A_243	1bjn	A	256	266	LKANGGVAEMD	HHHTTHHHHHH	aaaageaaaaa
1bsg_*_132	1bsg	-	139	149	LRELGGPAAVT	HHHHTSTHHHH	aaaageaaaaa
1bt4_A_242	1bt4	A	255	265	IEERGGLEGVQ	HHHTTHHHHHH	aaaaveaaaaa
1coj_A_98	1coj	A	105	115	EEDIGGLDACT	HHHTS-HHHHH	aaaageaaaaa
1dym_A_321	1dym	A	323	333	YMELGATQGMG	HHHTTHHHHHH	aaaageaaaaa
1e25_A_132	1e25	A	139	149	FELVGGPAALH	HHHHTHHHHHH	aaaageaaaaa
1eua_A_137	1eua	A	137	147	AEANGGVKALQ	HHHHTHHHHHH	aaaageaaaaa
1g6a_A_132	1g6a	A	139	149	LSAVGGPKGVT	HHHTTHHHHHH	aaaaveaaaaa
1ghp_A_132	1ghp	A	139	149	IKEIGGIKKVK	HHHHT-HHHHH	aaaageaaaaa
1i2s_A_132	1i2s	A	139	149	LKQIGGPESLK	HHHTT-HHHHH	aaaageaaaaa
1k4g_A_80	1k4g	A	83	93	IAKLGGLHSFM	HHHTT-HHHHH	aaaageaaaaa
1l5j_A_334	1l5j	A	338	348	EVRAGGRIPLI	HHHHTSHHHHH	aaaaveaaaaa
1lwy_A_204	1lwy	A	216	226	LEEQGGLAWLQ	HHTS-SHHHHH	aaNaveaaaaa
1mfo_A_132	1mfo	A	139	149	LKTIGGPAAVT	HHHHTSHHHHH	aaaageaaaaa
1muc_A_274	1muc	A	274	284	IAKNGGPRAVL	HHHHTSHHHHH	aaaageaaaaa
1mxs_A_149	1mxs	A	149	159	AEISGGVAAIK	HHHHTHHHHHH	aaaageaaaaa
1oja_A_182	1oja	A	189	199	VKQCGGTTRII	HHTTT-HHHHH	aaaaveaaaaa
1req_A_407	1req	A	427	437	VEKVGGMAKAI	HHHTT-HHHHH	aaaaveaaaaa
1req_B_403	1req	B	423	433	VEKLGGMSKAV	HHHTT-HHHHH	aaaaveaaaaa
2ovw_A_321	2ovw	A	323	333	YMRLGGTKQMG	HHHTTHHHHHH	aaaageaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ghp_A_132	1ghp	A	PNMOPEN FORM - PENICILLIN G	N - 132
1i2s_A_132	1i2s	A	CITCITRIC ACID	N - 132
1oja_A_182	1oja	A	ISNISATIN	I - 198
1oja_A_182	1oja	A	ISNISATIN	I - 199

Clusters included in this Subclass

CLUSTER: HH.1.46

CLUSTER: HH.2.38

CLUSTER: HH.3.41

CLUSTER: HH.3.86