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PDB code:

Information on SUBCLASS 3.3.1

Subclass Accession number: 8980 Subclass: 3.3.1 Type: HH alpha-alpha DB: ArchDB-EC Image coordinates: Consensus coordinates:

Number of loops: 38 Average sequence ID (%) : 13.3 +/- 16.3 Average RMSD (Å) : 0.724 +/- 0.227 Consensus geometry d (Å): 11 delta (°): 90-135 theta (°): 90-135 rho (°): 225-270

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1afw_A_186	1afw	A	193	204	VAANFKISRKDQ	HHHHTT--HHHH	aaaaalxxaaaa
1aog_A_434	1aog	A	443	454	ICLKLNAKISDF	HHHHTT-BHHHH	aaaaavxbaaaa
1b4u_A_79	1b4u	A	81	92	AMIDEGGNVYFL	HHHHTT--HHHH	aaaaagxbaaaa
1bgx_T_628	1bgx	T	630	641	RVFQEGRDIHTE	HHHHHT--HHHH	aaaaavbxaaaa
1c30_A_486	1c30	A	491	502	QLKRKGFADARL	HHHHTT--HHHH	aaaaavxxaaaa
1cli_A_278	1cli	A	283	294	LQTAGNVEHHEM	HHHHHT--HHHH	aaaaavxxaaaa
1d2z_A_82	1d2z	A	90	101	WGGQYNHTVQTL	HHHHH--BHHHH	aaaaalxxaaaa
1dc1_A_69	1dc1	A	72	83	LLYASGISDKAK	HHHHTT--HHHH	aaaaavbxaaaa
1dfo_A_367	1dfo	A	368	379	AITRRGFKEAEA	HHHHTT--HHHH	aaaaagxbaaaa
1dmh_A_28	1dmh	A	44	55	AIEDLNITSDEY	HHHHTT--HHHH	aaaaalxxaaaa
1dnp_A_38	1dnp	A	40	51	QWATHNMSPRQA	HHHHTT--HHHH	aaaaavpxaaaa
1e8c_A_305	1e8c	A	317	328	TLLALGYPLADL	HHHHTT--HHHH	aaaaavxxaaaa
1ebd_A_419	1ebd	A	428	439	LAIEAGMTAEDI	HHHHHT-BHHHH	aaaaavxxaaaa
1ez4_A_211	1ez4	A	214	225	VAKEQGVSDDDL	HHHHTT--HHHH	aaaaavbxaaaa
1fec_A_433	1fec	A	442	453	ICLKMGAKISDF	HHHHTT-BHHHH	aaaaavpbaaaa
1fs7_A_287	1fs7	A	287	298	IHGQKGVSCADC	HHHHTT--HHHH	aaaaavxxaaaa
1gvh_A_75	1gvh	A	84	95	KHTSFQIKPEQY	HHHHTT--HHHH	aaaaalxbaaaa
1h6v_A_445	1h6v	A	454	465	AALKCGLTKQQL	HHHHTT-BHHHH	aaaaavpbaaaa
1hn0_A_588	1hn0	A	594	605	YLAISDKTQNES	HHHHHT--HHHH	aaaaavbxaaaa
1irx_A_465	1irx	A	475	486	VAKRRGISSREW	HHHHHT--HHHH	aaaaavbxaaaa
1j09_A_253	1j09	A	255	266	WYKAEGFLPEAL	HHHHTT--HHHH	aaaaavxxaaaa
1j36_A_286	1j36	A	288	299	EMEKQAYTPLKM	HHHHTT--HHHH	aaaaavxbaaaa
1j6u_A_264	1j6u	A	276	287	LFDSLGYDLAPV	HHHHTT--HHHH	aaaaavxxaaaa
1jeh_A_430	1jeh	A	439	450	LALEYGASAEDV	HHHHTT-BHHHH	aaaaavxxaaaa
1kv5_A_96	1kv5	A	98	109	RRAYYGETNEIV	HHHHS---HHHH	aaaaavxxaaaa
1l3s_A_669	1l3s	A	673	684	EAFRRDLDIHTK	HHHHTT--HHHH	aaaaalxxaaaa
1lvl_*_413	1lvl	-	419	430	QSLEMGACLEDV	HHHHHT-BHHHH	aaaaavxbaaaa
1m3k_A_157	1m3k	A	164	175	VAKQWQLSRDEQ	HHHHTT--HHHH	aaaaalbxaaaa
1m6j_A_103	1m6j	A	105	116	RRQIFHESNEQV	HHHHS---HHHH	aaaaalxxaaaa
1m7s_A_484	1m7s	A	490	501	VAEVAKGDLSKV	HHHHTT--HHHH	aaaaavxxaaaa
1mo9_A_475	1mo9	A	483	494	VLIKQGLTVDEL	HHHHTT-BHHHH	aaaaagpbaaaa
1n55_A_96	1n55	A	98	109	RRTYYGETDEIV	HHHHS---HHHH	aaaaavxxaaaa
1nhp_*_400	1nhp	-	406	417	LAIQAKMTIEDL	HHHHTT-BHHHH	aaaaavxbaaaa
1onf_A_457	1onf	A	466	477	VALKMNATKKDF	HHHHTT-BHHHH	aaaaalpbaaaa
1oyn_A_131	1oyn	A	131	142	LLKTFKIPVDTL	HHHHTT--HHHH	aaaaalxxaaaa
2btm_A_95	2btm	A	97	108	RRQMFAETDETV	HHHHS---HHHH	aaaaavxbaaaa
3grs_*_440	3grs	-	449	460	VAVKMGATKADF	HHHHTT-BHHHH	aaaaavxbaaaa
3lad_A_423	3lad	A	432	443	IAMEFGTSAEDL	HHHHHT-BHHHH	aaaaagpbaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1afw_A_186	1afw	A	MPD2-METHYL-2,4-PENTANEDIOL	M - 186
1b4u_A_79	1b4u	A	FEFE (III) ION	Y - 90
1b4u_A_79	1b4u	A	DHB3,4-DIHYDROXYBENZOIC ACID	Y - 90
1dc1_A_69	1dc1	A	DIO1,4-DIETHYLENE DIOXIDE	S - 76
1dc1_A_69	1dc1	A	DIO1,4-DIETHYLENE DIOXIDE	I - 78
1dc1_A_69	1dc1	A	DIO1,4-DIETHYLENE DIOXIDE	K - 81
1dmh_A_28	1dmh	A	LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE	R - 29
1dmh_A_28	1dmh	A	LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE	V - 30
1dmh_A_28	1dmh	A	LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE	I - 33
1dmh_A_28	1dmh	A	LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE	I - 34
1dmh_A_28	1dmh	A	LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE	V - 37
1dmh_A_28	1dmh	A	LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE	L - 41
1dmh_A_28	1dmh	A	LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE	I - 45
1dmh_A_28	1dmh	A	LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE	I - 50
1dmh_A_28	1dmh	A	LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE	D - 53
1dmh_A_28	1dmh	A	LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE	E - 54
1dmh_A_28	1dmh	A	LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE	Y - 55
1dmh_A_28	1dmh	A	LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE	A - 57
1dmh_A_28	1dmh	A	LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE	G - 58
1dmh_A_28	1dmh	A	LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE	V - 59
1dmh_A_28	1dmh	A	LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE	Y - 61
1dmh_A_28	1dmh	A	LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE	L - 62
1dmh_A_28	1dmh	A	LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE	Q - 64
1dmh_A_28	1dmh	A	LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE	L - 65
1dnp_A_38	1dnp	A	MHF5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID	Q - 40
1dnp_A_38	1dnp	A	MHF5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID	T - 43
1dnp_A_38	1dnp	A	MHF5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID	H - 44
1e8c_A_305	1e8c	A	MSESELENOMETHIONINE	A - 305
1e8c_A_305	1e8c	A	MSESELENOMETHIONINE	F - 306
1e8c_A_305	1e8c	A	MSESELENOMETHIONINE	N - 307
1e8c_A_305	1e8c	A	MSESELENOMETHIONINE	V - 308
1e8c_A_305	1e8c	A	MSESELENOMETHIONINE	S - 309
1e8c_A_305	1e8c	A	MSESELENOMETHIONINE	L - 312
1fs7_A_287	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	I - 287
1fs7_A_287	1fs7	A	CACALCIUM ION	I - 287
1fs7_A_287	1fs7	A	ACTACETATE ION	I - 287
1fs7_A_287	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 288
1fs7_A_287	1fs7	A	CACALCIUM ION	H - 288
1fs7_A_287	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	G - 289
1fs7_A_287	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	K - 291
1fs7_A_287	1fs7	A	CACALCIUM ION	K - 291
1fs7_A_287	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	V - 293
1fs7_A_287	1fs7	A	CACALCIUM ION	V - 293
1fs7_A_287	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	S - 294
1fs7_A_287	1fs7	A	CACALCIUM ION	S - 294
1fs7_A_287	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	C - 295
1fs7_A_287	1fs7	A	CACALCIUM ION	C - 295
1fs7_A_287	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	A - 296
1fs7_A_287	1fs7	A	CACALCIUM ION	A - 296
1fs7_A_287	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	D - 297
1fs7_A_287	1fs7	A	CACALCIUM ION	D - 297
1fs7_A_287	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	C - 298
1fs7_A_287	1fs7	A	CACALCIUM ION	C - 298
1fs7_A_287	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 299
1fs7_A_287	1fs7	A	CACALCIUM ION	H - 299
1gvh_A_75	1gvh	A	HEMPROTOPORPHYRIN IX CONTAINING FE	K - 80
1gvh_A_75	1gvh	A	HEMPROTOPORPHYRIN IX CONTAINING FE	I - 81
1gvh_A_75	1gvh	A	FADFLAVIN-ADENINE DINUCLEOTIDE	K - 84
1gvh_A_75	1gvh	A	HEMPROTOPORPHYRIN IX CONTAINING FE	K - 84
1gvh_A_75	1gvh	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 85
1gvh_A_75	1gvh	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 88
1gvh_A_75	1gvh	A	HEMPROTOPORPHYRIN IX CONTAINING FE	I - 90
1gvh_A_75	1gvh	A	HEMPROTOPORPHYRIN IX CONTAINING FE	K - 91
1gvh_A_75	1gvh	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Q - 94
1gvh_A_75	1gvh	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Y - 95
1gvh_A_75	1gvh	A	HEMPROTOPORPHYRIN IX CONTAINING FE	N - 96
1gvh_A_75	1gvh	A	HEMPROTOPORPHYRIN IX CONTAINING FE	V - 98
1j6u_A_264	1j6u	A	MSESELENOMETHIONINE	N - 266
1j6u_A_264	1j6u	A	MSESELENOMETHIONINE	V - 267
1j6u_A_264	1j6u	A	MSESELENOMETHIONINE	N - 269
1j6u_A_264	1j6u	A	MSESELENOMETHIONINE	A - 270
1j6u_A_264	1j6u	A	MSESELENOMETHIONINE	V - 273
1j6u_A_264	1j6u	A	MSESELENOMETHIONINE	F - 277
1j6u_A_264	1j6u	A	MSESELENOMETHIONINE	L - 291
1kv5_A_96	1kv5	A	PGA2-PHOSPHOGLYCOLIC ACID	E - 97
1m3k_A_157	1m3k	A	GOLGLYCEROL	M - 157
1m3k_A_157	1m3k	A	GOLGLYCEROL	G - 158
1mo9_A_475	1mo9	A	FADFLAVIN-ADENINE DINUCLEOTIDE	K - 475
1n55_A_96	1n55	A	GOLGLYCEROL	R - 98
1n55_A_96	1n55	A	GOLGLYCEROL	C - 117
2btm_A_95	2btm	A	PGA2-PHOSPHOGLYCOLIC ACID	E - 96

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gvh_A_75	1gvh	A	AC2HEM BINDING SITE FOR CHAIN A	I - 81
1gvh_A_75	1gvh	A	AC2HEM BINDING SITE FOR CHAIN A	K - 84

Clusters included in this Subclass

CLUSTER: HH.3.10

CLUSTER: HH.4.6

CLUSTER: HH.5.3

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