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Information on SUBCLASS 3.3.5
Subclass Accession number: 8984
Subclass: 3.3.5 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 18.3 +/- 20.9
Average RMSD (Å) : 0.783 +/- 0.299

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 90-135 rho (°): 45-90
Consensus Sequence: XXGhXXX
(φψ)-conformation: aalppaa
Pattern: x[efhq]xx[ADKT][AER][ltv][G][FIVY][DNP][iltv][aeqs][ehks][ACLVY][alt][adqr]
Conservation:-0.226-0.512-1.050-0.333-0.3100.236-0.2973.4290.5160.567-0.236-0.432-0.151-0.313-0.191-0.696
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c30_A_3061c30   A309324ALASKATGFPIAKVAAHHHHHHHS--HHHHHHaaaaaaavxxaaaaaa
1c30_A_8501c30   A851866PFVSKATGVPLAKVAAHHHHHHHS--HHHHHHaaaaaaavxxaaaaaa
1d8w_A_121d8w   A2136KQRFAAVGIDVEEALRHHHHHHTT--HHHHHHaaaaaaavbxaaaaaa
1fxx_A_3171fxx   A317332PEDADRLGINRQHCLDHHHHHHHT--HHHHHHaaaaaaavxxaaaaaa
1mla_*_271mla   -3449AEASAALGYDLWALTQHHHHHHHTS-HHHHHHaaaaaaavbxaaaaaa
1p0k_A_3301p0k   A333348HHWLTERGVNTSSYSVHHHHHHTT--SHHHHHaaaaaaavxxaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1c30_A_3061c30   A     MNMANGANESE (II) ION R - 306
1c30_A_3061c30   A     ADPADENOSINE-5'-DIPHOSPHATE R - 306
1c30_A_3061c30   A     PIHYDROGENPHOSPHATE ION R - 306
1c30_A_3061c30   A     PIHYDROGENPHOSPHATE ION S - 307
1d8w_A_121d8w   A     MSESELENOMETHIONINE L - 13
1d8w_A_121d8w   A     MSESELENOMETHIONINE E - 14
1d8w_A_121d8w   A     MSESELENOMETHIONINE W - 17
1d8w_A_121d8w   A     MSESELENOMETHIONINE L - 35
1d8w_A_121d8w   A     MSESELENOMETHIONINE L - 38

Clusters included in this Subclass
CLUSTER: HH.3.87
CLUSTER: HH.4.97