ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.3.8

Subclass Accession number: 8987
Subclass: 3.3.8

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 4

Average sequence ID (%) : 13.2 +/- 12.5
Average RMSD (Å) : 0.925 +/- 0.287

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	ppGXpXp
(φψ)-conformation:	aalppaa

Pattern:	x	x	[LMPY]	x	x	[ALV]	[AKQ]	x	[AEGS]	x	x	[DHKS]	[G]	x	[DPRS]	[AEN]	[ST]	x	x	x	x	[AIL]	x	[EHKN]	x	[FLM]	x	[AGT]	x
Conservation:	-0.170	0.143	-0.485	-0.904	-0.590	0.292	0.191	-0.237	-0.066	0.303	-1.009	-0.066	4.179	-0.941	-0.432	-0.085	1.571	-0.223	-0.590	-0.799	-0.272	0.496	-0.380	0.511	-0.904	1.071	-0.275	0.277	-0.606

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1efy_A_703	1efy	A	711	739	SILNEVQQAVSDGGSESQILDLSNRFYTL	HHHHHHHHHHHTT--HHHHHHHHHHHHHH	aaaaaaaaaaaavxxaaaaaaaaaaaaaa
1egd_A_292	1egd	A	310	338	MSYQRAAWEVDSGRRNTYYASIAKAFAGD	HHHHHHHHHHHTTS--HHHHHHHHHHHHH	aaaaaaaaaaaavbxaaaaaaaaaaaaaa
1fo3_A_528	1fo3	A	528	556	FLPGTLALGVYHGLPASHMELAQELMETC	HHHHHHHHHHHTT--HHHHHHHHHHHHHH	aaaaaaaaaaaavxpaaaaaaaaaaaaaa
1moq_*_403	1moq	-	412	440	LLMLVAKLSRLKGLDASIEHDIVHGLQAL	HHHHHHHHHHHTT--HHHHHHHHHHHHHH	aaaaaaaaaaaavxpaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1egd_A_292	1egd	A	FADFLAVIN-ADENINE DINUCLEOTIDE	Q - 292
1egd_A_292	1egd	A	FADFLAVIN-ADENINE DINUCLEOTIDE	A - 293
1egd_A_292	1egd	A	FADFLAVIN-ADENINE DINUCLEOTIDE	I - 294
1egd_A_292	1egd	A	FADFLAVIN-ADENINE DINUCLEOTIDE	F - 296
1egd_A_292	1egd	A	FADFLAVIN-ADENINE DINUCLEOTIDE	M - 297
1egd_A_292	1egd	A	FADFLAVIN-ADENINE DINUCLEOTIDE	Q - 349
1egd_A_292	1egd	A	FADFLAVIN-ADENINE DINUCLEOTIDE	I - 350
1egd_A_292	1egd	A	FADFLAVIN-ADENINE DINUCLEOTIDE	L - 351
1fo3_A_528	1fo3	A	CACALCIUM ION	F - 528
1moq_*_403	1moq	*	GLPGLUCOSAMINE 6-PHOSPHATE	Q - 408

Clusters included in this Subclass