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Information on SUBCLASS 3.4.4
Subclass Accession number: 8998
Subclass: 3.4.4 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 9

Average sequence ID (%) : 12.3 +/- 15.4
Average RMSD (Å) : 0.733 +/- 0.235

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXXXXXp
(φψ)-conformation: aapapaa
Pattern: [aefl]x[acilmv]x[akrs]xx[cdhrs]x[EHKQWY]x[ARS]x[hknrsy]
Conservation:0.744-1.1660.956-0.3450.168-0.750-0.825-0.132-0.5721.120-0.9872.179-1.0270.637
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b04_A_1951b04   A200213AGSLRQLDPKVAASHHHHHSS-HHHHHHaaaaaxabaaaaaa
1hn0_A_4501hn0   A455468ALLLLEPDDQKRINHHHHT-SSHHHHHHaaaaapaxaaaaaa
1jr8_A_351jr8   A4760LYAELYPCGECSYHHHHHH-SSHHHHHHaaaaapabaaaaaa
1mhy_G_881mhy   G97110AKIKAAKSKYEAEAHHHHT--SHHHHHHaaaaaxabaaaaaa
1mty_G_871mty   G96109AKMNAAKDKWEAEKHHHHH--SHHHHHHaaaaapabaaaaaa
1p80_A_5171p80   A529542FELSKVVRPYIRERHHHHT-SSHHHHHHaaaaaxaxaaaaaa
1pii_*_2371pii   -237250SALMAHDDLHAAVRHHHHT-S-HHHHHHaaaaabaxaaaaaa
1qr0_A_261qr0   A3043EKCRRFYHKEDAHRHHHHH-SSHHHHHHaaaaaxaxaaaaaa
1qsa_A_5721qsa   A574587AFVESIPFSETRGYHHHHH-S-HHHHHHaaaaapaxaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1jr8_A_351jr8   A     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 48
1jr8_A_351jr8   A     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 52
1jr8_A_351jr8   A     FADFLAVIN-ADENINE DINUCLEOTIDE C - 54
1jr8_A_351jr8   A     FADFLAVIN-ADENINE DINUCLEOTIDE E - 56
1jr8_A_351jr8   A     FADFLAVIN-ADENINE DINUCLEOTIDE C - 57
1jr8_A_351jr8   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 58
1jr8_A_351jr8   A     FADFLAVIN-ADENINE DINUCLEOTIDE H - 60
1jr8_A_351jr8   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 61
1pii_*_2371pii   *     PO4PHOSPHATE ION S - 237
1pii_*_2371pii   *     PO4PHOSPHATE ION A - 238
1qr0_A_261qr0   A     COACOENZYME A K - 28
1qr0_A_261qr0   A     COACOENZYME A K - 31
1qr0_A_261qr0   A     COACOENZYME A F - 35
1qr0_A_261qr0   A     COACOENZYME A R - 43
1qr0_A_261qr0   A     COACOENZYME A T - 44
1qr0_A_261qr0   A     COACOENZYME A L - 45
1qr0_A_261qr0   A     COACOENZYME A G - 47
1qsa_A_5721qsa   A     GOLGLYCEROL A - 572
1qsa_A_5721qsa   A     GOLGLYCEROL V - 573
1qsa_A_5721qsa   A     GOLGLYCEROL A - 574
1qsa_A_5721qsa   A     GOLGLYCEROL Y - 587
1qsa_A_5721qsa   A     GOLGLYCEROL Y - 594
1qsa_A_5721qsa   A     GOLGLYCEROL D - 595
1qsa_A_5721qsa   A     GOLGLYCEROL A - 596
1qsa_A_5721qsa   A     GOLGLYCEROL R - 599

Clusters included in this Subclass
CLUSTER: HH.2.134
CLUSTER: HH.3.79
CLUSTER: HH.4.61