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Information on SUBCLASS 3.4.6
Subclass Accession number: 9000
Subclass: 3.4.6 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 13.2 +/- 15.4
Average RMSD (Å) : 0.700 +/- 0.216

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XphXpXp
(φψ)-conformation: aapapaa
Pattern: x[aen][adek][IL]x[CHKR][ilv]x[DNRST]x[adekns][akqt][ar][ADENST][ekry][filmv][ilvy]
Conservation:-0.651-0.530-0.5042.942-0.7320.9230.941-1.0650.428-1.387-0.605-0.4470.3510.244-0.2050.0230.276
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ca1_*_1741ca1   -176192YADILKNKDFNAWSKEYHHHHHH-S-HHHHHHHHaaaaaaxaxaaaaaaaa
1k87_A_1611k87   A169185AEALLRIPDKATRDALIHHHHHTSS-HHHHHHHHaaaaaaxabaaaaaaaa
1mhy_G_111mhy   G1733EAKIAKLTSVDQATKFIHHHHHT--SHHHHHHHHaaaaaaxabaaaaaaaa
1mty_G_101mty   G1632VNKIAHVNTLEKAAEMLHHHHHT--SHHHHHHHHaaaaaaxabaaaaaaaa
1ove_A_2441ove   A244260AELLKKISSESARNYIQHHHHHH---HHHHHHHHaaaaaaxaxaaaaaaaa
1p80_A_5171p80   A528544SFELSKVVRPYIRERVVHHHHHT-SSHHHHHHHHaaaaaaxaxaaaaaaaa
1pme_*_2491pme   -249265QEDLNCIINLKARNYLLHHHHHT---HHHHHHHHaaaaaabaxaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ca1_*_1741ca1   *     CDCADMIUM ION D - 174
1ca1_*_1741ca1   *     CDCADMIUM ION F - 175
1ca1_*_1741ca1   *     CDCADMIUM ION D - 178
1ca1_*_1741ca1   *     CDCADMIUM ION L - 180
1ca1_*_1741ca1   *     CDCADMIUM ION K - 181
1k87_A_1611k87   A     1PEPENTAETHYLENE GLYCOL E - 170
1k87_A_1611k87   A     1PEPENTAETHYLENE GLYCOL R - 174
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ca1_*_1741ca1   * CD7CD FROM CRYSTALLISATION BUFFER AT PROTEIN SURFACE.D - 174
1ca1_*_1741ca1   * CD7CD FROM CRYSTALLISATION BUFFER AT PROTEIN SURFACE.D - 178

Clusters included in this Subclass
CLUSTER: HH.4.54