Information on SUBCLASS 3.4.6 |
Subclass Accession number: 9000
Subclass: 3.4.6 Type: HH alpha-alpha DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 7 Average sequence ID (%) : 13.2 +/- 15.4 Average RMSD (Å) : 0.700 +/- 0.216 Consensus geometry
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Consensus Sequence: | XphXpXp |
(φψ)-conformation: | aapapaa |
Pattern: | x | [aen] | [adek] | [IL] | x | [CHKR] | [ilv] | x | [DNRST] | x | [adekns] | [akqt] | [ar] | [ADENST] | [ekry] | [filmv] | [ilvy] |
Conservation: | -0.651 | -0.530 | -0.504 | 2.942 | -0.732 | 0.923 | 0.941 | -1.065 | 0.428 | -1.387 | -0.605 | -0.447 | 0.351 | 0.244 | -0.205 | 0.023 | 0.276 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ca1_*_174 | 1ca1 | - | 176 | 192 | YADILKNKDFNAWSKEY | HHHHHH-S-HHHHHHHH | aaaaaaxaxaaaaaaaa |
1k87_A_161 | 1k87 | A | 169 | 185 | AEALLRIPDKATRDALI | HHHHHTSS-HHHHHHHH | aaaaaaxabaaaaaaaa |
1mhy_G_11 | 1mhy | G | 17 | 33 | EAKIAKLTSVDQATKFI | HHHHHT--SHHHHHHHH | aaaaaaxabaaaaaaaa |
1mty_G_10 | 1mty | G | 16 | 32 | VNKIAHVNTLEKAAEML | HHHHHT--SHHHHHHHH | aaaaaaxabaaaaaaaa |
1ove_A_244 | 1ove | A | 244 | 260 | AELLKKISSESARNYIQ | HHHHHH---HHHHHHHH | aaaaaaxaxaaaaaaaa |
1p80_A_517 | 1p80 | A | 528 | 544 | SFELSKVVRPYIRERVV | HHHHHT-SSHHHHHHHH | aaaaaaxaxaaaaaaaa |
1pme_*_249 | 1pme | - | 249 | 265 | QEDLNCIINLKARNYLL | HHHHHT---HHHHHHHH | aaaaaabaxaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ca1_*_174 | 1ca1 | * | CDCADMIUM ION | D - 174 |
1ca1_*_174 | 1ca1 | * | CDCADMIUM ION | F - 175 |
1ca1_*_174 | 1ca1 | * | CDCADMIUM ION | D - 178 |
1ca1_*_174 | 1ca1 | * | CDCADMIUM ION | L - 180 |
1ca1_*_174 | 1ca1 | * | CDCADMIUM ION | K - 181 |
1k87_A_161 | 1k87 | A | 1PEPENTAETHYLENE GLYCOL | E - 170 |
1k87_A_161 | 1k87 | A | 1PEPENTAETHYLENE GLYCOL | R - 174 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1ca1_*_174 | 1ca1 | * | CD7CD FROM CRYSTALLISATION BUFFER AT PROTEIN SURFACE. | D - 174 |
1ca1_*_174 | 1ca1 | * | CD7CD FROM CRYSTALLISATION BUFFER AT PROTEIN SURFACE. | D - 178 |
Clusters included in this Subclass |
CLUSTER: HH.4.54 |