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Information on SUBCLASS 3.5.2
Subclass Accession number: 9003
Subclass: 3.5.2 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 31.6 +/- 16.2
Average RMSD (Å) : 0.267 +/- 0.115

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: hXhcQXp
(φψ)-conformation: aallpaa
Pattern: [KPS][AE][KLT][KR][ENR][AE][L]x[EQT][AFL][AT][FG][GN][Q][AK][HY][V][AE][EQS]
Conservation:-0.785-0.435-1.2750.884-0.458-0.2421.175-1.357-0.540-1.112-0.093-0.4330.5931.910-0.4351.9641.175-0.242-0.295
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bkj_A_541bkj   A5472SEKRNELAQFAGNQAYVESHHHHHHHHHHTTS-THHHHaaaaaaaaaaavlxaaaaa
1f5v_A_541f5v   A5472KALREELVTLTGGQKHVAQHHHHHHHHHHTTS-THHHHaaaaaaaaaaavvxaaaaa
1nox_*_601nox   -6078PATKRALREAAFGQAHVEEHHHHHHHHHHTTT-THHHHaaaaaaaaaaalvxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bkj_A_541bkj   A     FMNFLAVIN MONONUCLEOTIDE A - 64
1bkj_A_541bkj   A     FMNFLAVIN MONONUCLEOTIDE Q - 67
1bkj_A_541bkj   A     PO4PHOSPHATE ION Q - 67
1bkj_A_541bkj   A     FMNFLAVIN MONONUCLEOTIDE Y - 69
1f5v_A_541f5v   A     FMNFLAVIN MONONUCLEOTIDE T - 64
1f5v_A_541f5v   A     FMNFLAVIN MONONUCLEOTIDE H - 69
1nox_*_601nox   *     FMNFLAVIN MONONUCLEOTIDE Q - 73
1nox_*_601nox   *     FMNFLAVIN MONONUCLEOTIDE H - 75
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1bkj_A_541bkj   A ASAFMN COFACTOR BINDING SITE-CHAIN A.Q - 67

Clusters included in this Subclass
CLUSTER: HH.4.180