ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.8.1

Subclass Accession number: 9009
Subclass: 3.8.1

PSSM

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 10

Average sequence ID (%) : 18.5 +/- 19.7
Average RMSD (Å) : 0.630 +/- 0.206

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 90-135

rho (°): 45-90

Consensus Sequence:	hhcXchp
(φψ)-conformation:	aagbpaa

Pattern:	x	x	[aegkq]	[ALTV]	[ailvy]	[DGK]	x	[DN]	[ILMPV]	[ADEPQST]	[adeqrst]	[afilmvy]	[ailmy]
Conservation:	-0.702	-0.925	-0.517	0.197	-0.239	1.456	-0.660	2.521	0.558	0.084	-0.670	-0.525	-0.577

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1b0z_A_211	1b0z	A	213	225	PIAVAGLNIDRMM	HHHHHT--HHHHH	aaaaagxxaaaaa
1d8w_A_12	1d8w	A	23	35	RFAAVGIDVEEAL	HHHHTT--HHHHH	aaaaavbxaaaaa
1fs7_A_448	1fs7	A	451	463	AQKLAKVDMEAFI	HHHHTT--HHHHH	aaaaalbxaaaaa
1gu6_A_437	1gu6	A	440	452	AQQAIGLNMEQIK	HHHHTT--HHHHH	aaaaagxxaaaaa
1k32_A_1037	1k32	A	1038	1050	HDYLSGKDPQIDY	HHHHTT--HHHHH	aaaaavbbaaaaa
1l5w_A_84	1l5w	A	90	102	SLKAYDINLTDLL	HHHTTT--HHHHH	aaaaavbxaaaaa
1m1n_A_155	1m1n	A	155	167	PIGLIGDDIESVS	HHHHHT--HHHHH	aaaaavxbaaaaa
1mio_B_106	1mio	B	107	119	LSETLGDDLPTYI	HHHHHT--HHHHH	aaaaavxxaaaaa
1qdb_A_454	1qdb	A	457	469	AQKLAKVDIAALA	HHHHHT--HHHHH	aaaaavbbaaaaa
1qgu_A_154	1qgu	A	154	166	PVGLIGDDISAVA	HHHHTT--HHHHH	aaaaavxbaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1d8w_A_12	1d8w	A	MSESELENOMETHIONINE	L - 13
1d8w_A_12	1d8w	A	MSESELENOMETHIONINE	E - 14
1d8w_A_12	1d8w	A	MSESELENOMETHIONINE	W - 17
1d8w_A_12	1d8w	A	MSESELENOMETHIONINE	L - 35
1d8w_A_12	1d8w	A	MSESELENOMETHIONINE	L - 38
1m1n_A_155	1m1n	A	CLFFE(8)-S(7) CLUSTER	P - 155
1mio_B_106	1mio	B	CLPFE-S CLUSTER	C - 106
1mio_B_106	1mio	B	CLPFE-S CLUSTER	L - 107
1qgu_A_154	1qgu	A	CLFFE(8)-S(7) CLUSTER	P - 154

Clusters included in this Subclass

CLUSTER: HH.3.74

CLUSTER: HH.4.131

CLUSTER: HH.4.210

CLUSTER: HH.5.75