Logo
Information on SUBCLASS 3.8.2
Subclass Accession number: 9010
Subclass: 3.8.2 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 65.9 +/- -15.5
Average RMSD (Å) : 0.267 +/- 0.058

Consensus geometry
d (Å): 21 delta (°): 0-45 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: ThGhphp
(φψ)-conformation: aagbpaa
Pattern: [Y][LM][GP][M][V][LWY][A][M][AMV][AS][I][G][FIV][L][G][F][IV][V][W][A][H][H][M][FY][T][AV][G][LM][DS][LV][DT][QT][QR][AS][Y][F][MT]x[A][T][M][ITV]
Conservation:1.342-0.469-0.9010.384-0.094-0.946-0.0940.384-1.318-0.808-0.0940.863-1.052-0.0940.8630.863-0.332-0.0943.257-0.0941.8211.8210.3840.2890.384-1.0460.863-0.394-0.843-0.808-0.941-1.043-0.567-0.7911.3420.863-1.043-1.424-0.0940.3840.384-1.105
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ar1_A_3051ar1   A305346YLPMVLAMAAIGILGFVVWAHHMYTAGMSLTQQAYFMLATMTHHHHHHHHHHHHHHTTS-GGGG-GGGT--HHHHHHHHHHHHHaaaaaaaaaaaaaaaaaaaaaaaaaagbxaaaaaaaaaaaaa
1m56_A_3131m56   A313354YLPMVYAMVAIGVLGFVVWAHHMYTAGLSLTQQSYFMMATMVHHHHHHHHHHHHHHTTS-GGGGGTTSS--HHHHHHHHHHHHHaaaaaaaaaaaaaaaaaaaaaaaaaaSbxaaaaaaaaaaaaa
2occ_A_2702occ   A270311YMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIHHHHHHHHHHHHHHTTS-GGGG-TTS---HHHHHHHHHHHHHaaaaaaaaaaaaaaaaaaaaaaaaaavxpaaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ar1_A_3051ar1   A     CUCOPPER (II) ION V - 322
1ar1_A_3051ar1   A     CUCOPPER (II) ION W - 323
1ar1_A_3051ar1   A     HEAHEME-A H - 325
1ar1_A_3051ar1   A     CUCOPPER (II) ION H - 325
1ar1_A_3051ar1   A     CACALCIUM ION H - 325
1ar1_A_3051ar1   A     HEAHEME-A H - 326
1ar1_A_3051ar1   A     CUCOPPER (II) ION H - 326
1ar1_A_3051ar1   A     CACALCIUM ION H - 326
1ar1_A_3051ar1   A     HEAHEME-A M - 327
1ar1_A_3051ar1   A     HEAHEME-A Y - 328
1ar1_A_3051ar1   A     MGMAGNESIUM ION T - 329
1ar1_A_3051ar1   A     LDALAURYL DIMETHYLAMINE-N-OXIDE L - 342
1ar1_A_3051ar1   A     HEAHEME-A T - 344
1ar1_A_3051ar1   A     HEAHEME-A M - 345
1ar1_A_3051ar1   A     LDALAURYL DIMETHYLAMINE-N-OXIDE M - 345
1ar1_A_3051ar1   A     LDALAURYL DIMETHYLAMINE-N-OXIDE T - 346
1m56_A_3131m56   A     PEHDI-STEAROYL-3-SN-PHOSPHATIDYLETHANOLAMINE Y - 318
1m56_A_3131m56   A     PEHDI-STEAROYL-3-SN-PHOSPHATIDYLETHANOLAMINE V - 321
1m56_A_3131m56   A     PEHDI-STEAROYL-3-SN-PHOSPHATIDYLETHANOLAMINE G - 324
1m56_A_3131m56   A     PEHDI-STEAROYL-3-SN-PHOSPHATIDYLETHANOLAMINE V - 325
1m56_A_3131m56   A     PEHDI-STEAROYL-3-SN-PHOSPHATIDYLETHANOLAMINE L - 326
1m56_A_3131m56   A     PEHDI-STEAROYL-3-SN-PHOSPHATIDYLETHANOLAMINE F - 328
1m56_A_3131m56   A     PEHDI-STEAROYL-3-SN-PHOSPHATIDYLETHANOLAMINE V - 329
1m56_A_3131m56   A     CUCOPPER (II) ION V - 330
1m56_A_3131m56   A     CUCOPPER (II) ION W - 331
1m56_A_3131m56   A     PEHDI-STEAROYL-3-SN-PHOSPHATIDYLETHANOLAMINE W - 331
1m56_A_3131m56   A     CUCOPPER (II) ION H - 333
1m56_A_3131m56   A     CACALCIUM ION H - 333
1m56_A_3131m56   A     HEAHEME-A H - 333
1m56_A_3131m56   A     CUCOPPER (II) ION H - 334
1m56_A_3131m56   A     MGMAGNESIUM ION H - 334
1m56_A_3131m56   A     CACALCIUM ION H - 334
1m56_A_3131m56   A     HEAHEME-A H - 334
1m56_A_3131m56   A     HEAHEME-A M - 335
1m56_A_3131m56   A     CACALCIUM ION Y - 336
1m56_A_3131m56   A     HEAHEME-A Y - 336
1m56_A_3131m56   A     MGMAGNESIUM ION T - 337
1m56_A_3131m56   A     PEHDI-STEAROYL-3-SN-PHOSPHATIDYLETHANOLAMINE G - 339
1m56_A_3131m56   A     PEHDI-STEAROYL-3-SN-PHOSPHATIDYLETHANOLAMINE L - 340
1m56_A_3131m56   A     PEHDI-STEAROYL-3-SN-PHOSPHATIDYLETHANOLAMINE S - 341
1m56_A_3131m56   A     PEHDI-STEAROYL-3-SN-PHOSPHATIDYLETHANOLAMINE T - 343
1m56_A_3131m56   A     PEHDI-STEAROYL-3-SN-PHOSPHATIDYLETHANOLAMINE Q - 344
1m56_A_3131m56   A     PEHDI-STEAROYL-3-SN-PHOSPHATIDYLETHANOLAMINE Y - 347
1m56_A_3131m56   A     PEHDI-STEAROYL-3-SN-PHOSPHATIDYLETHANOLAMINE F - 348
1m56_A_3131m56   A     HEAHEME-A T - 352
1m56_A_3131m56   A     HEAHEME-A M - 353
2occ_A_2702occ   A     CUCOPPER (II) ION V - 287
2occ_A_2702occ   A     CUCOPPER (II) ION W - 288
2occ_A_2702occ   A     HEAHEME-A H - 290
2occ_A_2702occ   A     CUCOPPER (II) ION H - 290
2occ_A_2702occ   A     PERPEROXIDE ION H - 290
2occ_A_2702occ   A     HEAHEME-A H - 291
2occ_A_2702occ   A     CUCOPPER (II) ION H - 291
2occ_A_2702occ   A     MGMAGNESIUM ION H - 291
2occ_A_2702occ   A     PERPEROXIDE ION H - 291
2occ_A_2702occ   A     HEAHEME-A F - 293
2occ_A_2702occ   A     MGMAGNESIUM ION T - 294
2occ_A_2702occ   A     HEAHEME-A T - 309
2occ_A_2702occ   A     HEAHEME-A M - 310
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ar1_A_3051ar1   A CUBCU B BINDING SITE.H - 325
1ar1_A_3051ar1   A CUBCU B BINDING SITE.H - 326

Clusters included in this Subclass
CLUSTER: HH.14.8