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Information on SUBCLASS 4.1.3
Subclass Accession number: 9033
Subclass: 4.1.3 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 9

Average sequence ID (%) : 15.1 +/- 15.9
Average RMSD (Å) : 0.678 +/- 0.295

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XXcXhXhX
(φψ)-conformation: aalabpaa
Pattern: x[aglmv][FILV]xx[DGR]x[FIL][DGNPST][ILPTV][aenpqs][ekmq][AILV]x
Conservation:-1.043-0.7251.073-0.654-0.6201.382-0.9641.719-0.2800.296-0.4030.7260.897-1.403
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1g5t_A_1291g5t   A131144YMVAYDYLPLEEVIHHHHTTSS-HHHHHaaaaalabxaaaaa
1h5y_A_2281h5y   A228241SLFHFRVLSIAQVKHHHHTTSS-HHHHHaaaaalabxaaaaa
1ikt_A_761ikt   A8093MEVVLGKLDPQKAFHHHHTTSS-HHHHHaaaaavabxaaaaa
1ire_A_101ire   A2740MLIEQGILTTSMIDHHHHTTS--HHHHHaaaaavabbaaaaa
1ire_B_681ire   B7992HGVRTGKIDLEELEHHHHTT-S-HHHHHaaaaavabxaaaaa
1jvn_A_5241jvn   A524537GMFHRGEFTVNDVKHHHHTTS--HHHHHaaaaavabbaaaaa
1ka9_F_2261ka9   F226239SVFHFGEIPIPKLKHHHHTTSS-HHHHHaaaaavabxaaaaa
1kol_A_3401kol   A349362QAIMWDRINIAEVVHHHHTTS--HHHHHaaaaalabbaaaaa
1qnf_*_2441qnf   -245258PALKFGAIGIRQAWHHHHTTSS-HHHHHaaaaavabxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1g5t_A_1291g5t   A     MGMAGNESIUM ION Y - 131
1g5t_A_1291g5t   A     ATPADENOSINE-5'-TRIPHOSPHATE Y - 131
1h5y_A_2281h5y   A     PO4PHOSPHATE ION S - 228
1h5y_A_2281h5y   A     PO4PHOSPHATE ION L - 229
1ikt_A_761ikt   A     OXNOXTOXYNOL-10 F - 79
1ikt_A_761ikt   A     OXNOXTOXYNOL-10 V - 82
1ikt_A_761ikt   A     OXNOXTOXYNOL-10 V - 83
1ikt_A_761ikt   A     OXNOXTOXYNOL-10 P - 89
1ikt_A_761ikt   A     OXNOXTOXYNOL-10 Q - 90
1ikt_A_761ikt   A     OXNOXTOXYNOL-10 F - 93
1ikt_A_761ikt   A     OXNOXTOXYNOL-10 F - 94
1ire_B_681ire   B     CSD3-SULFINOALANINE Y - 68
1qnf_*_2441qnf   *     FADFLAVIN-ADENINE DINUCLEOTIDE S - 244
1qnf_*_2441qnf   *     FADFLAVIN-ADENINE DINUCLEOTIDE P - 245
1qnf_*_2441qnf   *     FADFLAVIN-ADENINE DINUCLEOTIDE L - 247
1qnf_*_2441qnf   *     FADFLAVIN-ADENINE DINUCLEOTIDE K - 248
1qnf_*_2441qnf   *     HDF8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE K - 248
1qnf_*_2441qnf   *     HDF8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE F - 249

Clusters included in this Subclass
CLUSTER: HH.4.164
CLUSTER: HH.5.102
CLUSTER: HH.6.23