ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.7.3

Subclass Accession number: 9048
Subclass: 4.7.3

PSSM

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 3

Average sequence ID (%) : 15.0 +/- 13.3
Average RMSD (Å) : 1.000 +/- 0.100

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	XXhXXpXp
(φψ)-conformation:	aabpbpaa

Pattern:	[DPT]	[QRW]	x	[AQS]	x	x	[LV]	[KTW]	x	[DS]	[PQ]	[DHK]	[AER]	[L]	x	[AQ]	[ANS]	[IL]	[QR]	x
Conservation:	-0.387	-0.282	-0.912	-0.282	-1.227	-1.227	0.850	-0.702	-0.387	1.232	1.322	-0.282	-0.597	2.133	-0.807	0.108	-0.177	1.278	1.368	-1.017

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a5t_*_169	1a5t	-	174	193	TWLSREVTMSQDALLAALRL	HHHHHH----HHHHHHHHHH	aaaaaabbbxaaaaaaaaaa
1i6k_A_41	1i6k	A	41	60	DQHAITVWQDPHELRQNIRR	HHHHTTS---HHHHHHHHHH	aaaaaabpbxaaaaaaaaaa
1kiy_A_50	1kiy	A	50	69	PRQQQLLKVDPKRLQASLQT	HHHHHH----HHHHHHHHHH	aaaaaaxxbxaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1i6k_A_41	1i6k	A	MSESELENOMETHIONINE	H - 43
1i6k_A_41	1i6k	A	TYMTRYPTOPHANYL-5'AMP	H - 43
1i6k_A_41	1i6k	A	GOLGLYCEROL	P - 51
1i6k_A_41	1i6k	A	GOLGLYCEROL	H - 52
1i6k_A_41	1i6k	A	GOLGLYCEROL	R - 55
1i6k_A_41	1i6k	A	MSESELENOMETHIONINE	Q - 56
1i6k_A_41	1i6k	A	GOLGLYCEROL	Q - 56
1i6k_A_41	1i6k	A	GOLGLYCEROL	N - 57
1i6k_A_41	1i6k	A	MSESELENOMETHIONINE	R - 59
1i6k_A_41	1i6k	A	GOLGLYCEROL	R - 59
1i6k_A_41	1i6k	A	MSESELENOMETHIONINE	R - 60
1i6k_A_41	1i6k	A	GOLGLYCEROL	R - 60
1i6k_A_41	1i6k	A	GOLGLYCEROL	L - 61
1i6k_A_41	1i6k	A	MSESELENOMETHIONINE	A - 63
1i6k_A_41	1i6k	A	GOLGLYCEROL	L - 64
1kiy_A_50	1kiy	A	EDO1,2-ETHANEDIOL	L - 55
1kiy_A_50	1kiy	A	EDO1,2-ETHANEDIOL	L - 56
1kiy_A_50	1kiy	A	EDO1,2-ETHANEDIOL	K - 57
1kiy_A_50	1kiy	A	EDO1,2-ETHANEDIOL	V - 58
1kiy_A_50	1kiy	A	EDO1,2-ETHANEDIOL	T - 69
1kiy_A_50	1kiy	A	EDO1,2-ETHANEDIOL	I - 70
1kiy_A_50	1kiy	A	EDO1,2-ETHANEDIOL	M - 73

Clusters included in this Subclass

CLUSTER: HH.5.112