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Information on SUBCLASS 5.3.1
Subclass Accession number: 9098
Subclass: 5.3.1 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 10

Average sequence ID (%) : 19.7 +/- 23.3
Average RMSD (Å) : 0.800 +/- 0.287

Consensus geometry
d (Å): 17 delta (°): 90-135 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: hXcXXhXXX
(φψ)-conformation: aalppppaa
Pattern: x[AEKS]x[altv][HKMRY]x[flmpv][dqsy][deknq][acfilm][anstv][GKNS]x[hkprs][AIV][ANPST][adekt][aens][agilm][AERT][giklm]
Conservation:-0.8590.966-1.079-0.1270.204-0.650-0.309-0.6050.287-0.902-0.8811.3470.598-0.1082.8311.302-0.200-0.106-0.8780.448-1.279
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b5t_A_2171b5t   A217237FKQAKKFADMTNVRIPAWMAQHHHHHHHHHTTT----HHHHHaaaaaaaaaaavxxxwaaaaa
1cc1_L_741cc1   L7999TASVMAQDDAFGVKVTTNGRIHHHHHHHHHHHT----HHHHHaaaaaaaaaaavxbxxaaaaa
1frf_L_781frf   L81101LASSRCVDDAVKVSIPANARMHHHHHHHHHHHT----HHHHHaaaaaaaaaaavbbpxaaaaa
1i74_A_1191i74   A120140SSIVYRLYKENGVAIPKEIAGHHHHHHHHHHHT----HHHHHaaaaaaaaaaavxxxxaaaaa
1k20_A_1211k20   A122142SSIVYRMFKEHSVAVSKEIAGHHHHHHHHHHTT----HHHHHaaaaaaaaaaalbxbxaaaaa
1m1n_B_3211m1n   B326346DEFLMKVSEISGQPIPASLTKHHHHHHHHHHH-----HHHHHaaaaaaaaaaavxxxxaaaaa
1pn9_A_1041pn9   A108128FADYHYPQIFAKQPANPENEKHHHHHHHHHHH-----HHHHHaaaaaaaaaaalxwpbaaaaa
1qgu_B_3181qgu   B322342DELLMTVSQLSGKPIADALTLHHHHHHHHHHH-----HHHHHaaaaaaaaaaavxxxxaaaaa
1ubk_L_871ubk   L90110LASTRCVDNAVGVHIPKNATYHHHHHHHHHHHT----HHHHHaaaaaaaaaaavxbxxaaaaa
2frv_B_712frv   B7494LASVRAVDNCVGVKIPENATLHHHHHHHHHHHT----HHHHHaaaaaaaaaaavxbxxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cc1_L_741cc1   L     NINICKEL (II) ION P - 74
1cc1_L_741cc1   L     H2SHYDROSULFURIC ACID P - 74
1cc1_L_741cc1   L     H2SHYDROSULFURIC ACID T - 75
1cc1_L_741cc1   L     FCOCARBONMONOXIDE-(DICYANO) IRON A - 76
1cc1_L_741cc1   L     H2SHYDROSULFURIC ACID A - 76
1cc1_L_741cc1   L     NINICKEL (II) ION H - 77
1cc1_L_741cc1   L     FCOCARBONMONOXIDE-(DICYANO) IRON H - 77
1cc1_L_741cc1   L     H2SHYDROSULFURIC ACID H - 77
1cc1_L_741cc1   L     H2SHYDROSULFURIC ACID F - 105
1cc1_L_741cc1   L     H2SHYDROSULFURIC ACID N - 108
1cc1_L_741cc1   L     H2SHYDROSULFURIC ACID Y - 109
1cc1_L_741cc1   L     FCOCARBONMONOXIDE-(DICYANO) IRON S - 112
1cc1_L_741cc1   L     H2SHYDROSULFURIC ACID S - 112
1frf_L_781frf   L     FEFE (III) ION V - 78
1frf_L_781frf   L     FEFE (III) ION H - 79
1frf_L_781frf   L     NINICKEL (II) ION H - 79
1i74_A_1191i74   A     MNMANGANESE (II) ION A - 119
1i74_A_1191i74   A     MSESELENOMETHIONINE S - 120
1i74_A_1191i74   A     MSESELENOMETHIONINE S - 121
1i74_A_1191i74   A     MSESELENOMETHIONINE V - 123
1i74_A_1191i74   A     MSESELENOMETHIONINE Y - 124
1i74_A_1191i74   A     MSESELENOMETHIONINE Y - 127
1i74_A_1191i74   A     MSESELENOMETHIONINE I - 134
1i74_A_1191i74   A     MSESELENOMETHIONINE E - 137
1i74_A_1191i74   A     MSESELENOMETHIONINE I - 138
1i74_A_1191i74   A     MSESELENOMETHIONINE A - 139
1i74_A_1191i74   A     MSESELENOMETHIONINE G - 140
1k20_A_1211k20   A     MNMANGANESE (II) ION A - 121
1k20_A_1211k20   A     MNMANGANESE (II) ION S - 122
1k20_A_1211k20   A     MNMANGANESE (II) ION G - 147
1k20_A_1211k20   A     GOLGLYCEROL S - 150
1k20_A_1211k20   A     MNMANGANESE (II) ION D - 151
1m1n_B_3211m1n   B     CACALCIUM ION D - 353
1m1n_B_3211m1n   B     CACALCIUM ION M - 354
1m1n_B_3211m1n   B     CACALCIUM ION T - 356
1m1n_B_3211m1n   B     CACALCIUM ION D - 357
1pn9_A_1041pn9   A     GTXS-HEXYLGLUTATHIONE Y - 105
1pn9_A_1041pn9   A     GTXS-HEXYLGLUTATHIONE R - 107
1pn9_A_1041pn9   A     GTXS-HEXYLGLUTATHIONE Y - 113
1pn9_A_1041pn9   A     GTXS-HEXYLGLUTATHIONE F - 117
1qgu_B_3181qgu   B     MO2MAGNESIUM ION, 2 WATERS COORDINATED D - 349
1qgu_B_3181qgu   B     MO2MAGNESIUM ION, 2 WATERS COORDINATED M - 350
1qgu_B_3181qgu   B     MO2MAGNESIUM ION, 2 WATERS COORDINATED D - 353
1qgu_B_3181qgu   B     EDO1,2-ETHANEDIOL T - 356
1qgu_B_3181qgu   B     EDO1,2-ETHANEDIOL W - 357
1ubk_L_871ubk   L     FNE(MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS, S)NICKEL(II)](FE-NI) T - 87
1ubk_L_871ubk   L     FNE(MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS, S)NICKEL(II)](FE-NI) H - 88
1ubk_L_871ubk   L     FNE(MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS, S)NICKEL(II)](FE-NI) D - 123
1ubk_L_871ubk   L     CMOCARBON MONOXIDE D - 123
2frv_B_712frv   B     FCOCARBONMONOXIDE-(DICYANO) IRON V - 71
2frv_B_712frv   B     OOXYGEN ATOM V - 71
2frv_B_712frv   B     FCOCARBONMONOXIDE-(DICYANO) IRON H - 72
2frv_B_712frv   B     NINICKEL (II) ION H - 72
2frv_B_712frv   B     OOXYGEN ATOM H - 72
2frv_B_712frv   B     FCOCARBONMONOXIDE-(DICYANO) IRON D - 107
2frv_B_712frv   B     OOXYGEN ATOM D - 107

Clusters included in this Subclass
CLUSTER: HH.6.11