Logo
Information on SUBCLASS 5.3.2
Subclass Accession number: 9099
Subclass: 5.3.2 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 9

Average sequence ID (%) : 23.9 +/- 22.4
Average RMSD (Å) : 0.656 +/- 0.445

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: pXcXXhXpX
(φψ)-conformation: aalppppaa
Pattern: [AIKL][dknqst][acfimy][ILMV][dek][adenqr][gn][adegkq][ilp][ITV][NPST][DQS][de][FILVW][ILMTV]
Conservation:-0.715-0.821-1.4801.5010.029-0.7240.816-1.030-1.3131.6950.3811.1270.1520.1210.262
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aky_*_481aky   -5468KKIMDQGGLVSDDIMHHHHHTT----HHHHaaaaaavxbxpaaaa
1e4v_A_501e4v   A5064KDIMDAGKLVTDELVHHHHHHT----HHHHaaaaaavbxxpaaaa
1ng4_A_3351ng4   A342356ISDLIMNKEVNQDWLHHHHHTT----HHHHaaaaaavxxbpaaaa
1nm8_A_4961nm8   A504518LQAIEDLVSTPDIFMHHHHHTT----HHHHaaaaaavbxpwaaaa
1qf9_A_521qf9   A5670ATMIKNGEIVPSIVTHHHHHTT----HHHHaaaaaavxxxpaaaa
1qmg_A_5401qmg   A541555LVAVDNGAPINQDLIHHHHHTT----HHHHaaaaaavpxxxaaaa
1ukz_*_631ukz   -6781KNCIKEGQIVPQEITHHHHHTT----HHHHaaaaaavxxxpaaaa
1zin_*_441zin   -5064KQYMDRGDLVPDEVTHHHHHHT----HHHHaaaaaavxxxwaaaa
2ak3_A_492ak3   A5569KTFIDQGKLIPDDVMHHHHHTT----HHHHaaaaaalbxxwaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE A - 53
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE I - 56
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE M - 57
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE D - 58
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE G - 60
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE G - 61
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE L - 62
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE V - 63
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE S - 64
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE D - 65
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE M - 68
1e4v_A_501e4v   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE I - 52
1e4v_A_501e4v   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE M - 53
1e4v_A_501e4v   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE D - 54
1e4v_A_501e4v   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE G - 56
1e4v_A_501e4v   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE K - 57
1e4v_A_501e4v   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE L - 58
1e4v_A_501e4v   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE V - 59
1e4v_A_501e4v   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE T - 60
1e4v_A_501e4v   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE D - 61
1e4v_A_501e4v   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE V - 64
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE I - 55
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE M - 58
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE I - 59
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE K - 60
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE N - 61
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE G - 62
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE E - 63
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE I - 64
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE V - 65
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE P - 66
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE T - 70
1ukz_*_631ukz   *     AMPADENOSINE MONOPHOSPHATE I - 66
1ukz_*_631ukz   *     AMPADENOSINE MONOPHOSPHATE C - 69
1ukz_*_631ukz   *     AMPADENOSINE MONOPHOSPHATE I - 70
1ukz_*_631ukz   *     AMPADENOSINE MONOPHOSPHATE K - 71
1ukz_*_631ukz   *     AMPADENOSINE MONOPHOSPHATE E - 72
1ukz_*_631ukz   *     AMPADENOSINE MONOPHOSPHATE G - 73
1ukz_*_631ukz   *     AMPADENOSINE MONOPHOSPHATE Q - 74
1ukz_*_631ukz   *     AMPADENOSINE MONOPHOSPHATE I - 75
1ukz_*_631ukz   *     AMPADENOSINE MONOPHOSPHATE V - 76
1ukz_*_631ukz   *     AMPADENOSINE MONOPHOSPHATE P - 77
1ukz_*_631ukz   *     AMPADENOSINE MONOPHOSPHATE T - 81
1zin_*_441zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE A - 49
1zin_*_441zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE Y - 52
1zin_*_441zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE D - 57
1zin_*_441zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE P - 60
1zin_*_441zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE T - 64
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE F - 57
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE I - 58
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE G - 61
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE K - 62
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE L - 63
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE I - 64
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE P - 65
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE D - 66
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE M - 69

Clusters included in this Subclass
CLUSTER: HH.5.23
CLUSTER: HH.7.18