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Information on SUBCLASS 5.15.1
Subclass Accession number: 9119
Subclass: 5.15.1 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 34.3 +/- 26.3
Average RMSD (Å) : 0.400 +/- 0.200

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 45-90 rho (°): 225-270
Consensus Sequence: ppcXXXXXp
(φψ)-conformation: aalapapaa
Pattern: [AKNR][HY][FY][AIKV][DN][L][EQR][EKNS][GKNQ][CDK]xxxx[KS]x[Q][EQR]
Conservation:-0.8251.6611.572-1.1080.9371.1110.123-0.503-0.825-1.0410.215-0.646-0.781-1.0450.017-0.6831.7560.066
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1gwu_A_2321gwu   A232249KYYVNLEEQKGLIQSDQEHHHHHHHTT--SSHHHHHaaaaaaaavaxaxaaaaa
1mk0_A_241mk0   A3047RHFKDLEKGCHSSIKLQRHHHHHHHHT--S-HHHHHaaaaaaaavaxabaaaaa
1pa2_A_2311pa2   A231248NYFANLQSNDGLLQSDQEHHHHHHHTT--SSHHHHHaaaaaaaavaxaxaaaaa
1sch_A_2241sch   A224241AYYINLRNKKGLLHSDQQHHHHHHHTT--SSHHHHHaaaaaaaalaxaxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gwu_A_2321gwu   A     CACALCIUM ION K - 232
1gwu_A_2321gwu   A     CACALCIUM ION Y - 233
1gwu_A_2321gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 244
1gwu_A_2321gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 246
1gwu_A_2321gwu   A     CACALCIUM ION S - 246
1mk0_A_241mk0   A     CITCITRIC ACID R - 27
1mk0_A_241mk0   A     CITCITRIC ACID R - 30
1mk0_A_241mk0   A     CITCITRIC ACID H - 31
1mk0_A_241mk0   A     CITCITRIC ACID H - 40
1mk0_A_241mk0   A     CITCITRIC ACID S - 41
1pa2_A_2311pa2   A     CACALCIUM ION N - 231
1pa2_A_2311pa2   A     CACALCIUM ION Y - 232
1pa2_A_2311pa2   A     MGMAGNESIUM ION A - 234
1pa2_A_2311pa2   A     MGMAGNESIUM ION N - 235
1pa2_A_2311pa2   A     MGMAGNESIUM ION Q - 237
1pa2_A_2311pa2   A     MGMAGNESIUM ION S - 238
1pa2_A_2311pa2   A     MGMAGNESIUM ION D - 240
1pa2_A_2311pa2   A     CACALCIUM ION L - 243
1pa2_A_2311pa2   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 243
1pa2_A_2311pa2   A     CACALCIUM ION S - 245
1pa2_A_2311pa2   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 245
1sch_A_2241sch   A     CACALCIUM ION A - 224
1sch_A_2241sch   A     CACALCIUM ION Y - 225
1sch_A_2241sch   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 236
1sch_A_2241sch   A     CACALCIUM ION L - 236
1sch_A_2241sch   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 238
1sch_A_2241sch   A     CACALCIUM ION S - 238
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1sch_A_2241sch   A APHPROXIMAL HEME POCKET.D - 239

Clusters included in this Subclass
CLUSTER: HH.5.80