Information on SUBCLASS 6.2.1 |
Subclass Accession number: 9129
Subclass: 6.2.1 Type: HH alpha-alpha DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 14.3 +/- 13.8 Average RMSD (Å) : 0.725 +/- 0.340 Consensus geometry
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Consensus Sequence: | XphpXchXXX |
(φψ)-conformation: | aapbpgppaa |
Pattern: | [FMVY] | [AG] | x | [ACL] | x | [AKS] | x | [FLWY] | [EHKR] | [EPQ] | [DGN] | [LM] | [EGST] | [KP] | [EL] | [DE] | [ALTV] | [AFIV] | [ADEK] | x | [AIV] |
Conservation: | -0.177 | 0.830 | -1.289 | 0.538 | -0.660 | -0.026 | -1.158 | 0.476 | 0.019 | 0.454 | 0.646 | 1.668 | -0.962 | 0.883 | 0.031 | 2.347 | -0.766 | -0.701 | -0.701 | -1.747 | 0.293 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1j33_A_195 | 1j33 | A | 205 | 225 | VARALARLHPGMGPLEVAAEV | HHHHHTT--TT--HHHHHHHH | aaaaaaaxbxgpxaaaaaaaa |
1ryp_H_135 | 1ryp | H | 135 | 155 | YGYCDKNFRENMSKEETVDFI | HHHHHHH--TT--HHHHHHHH | aaaaaaaxbxvxxaaaaaaaa |
1ryp_I_131 | 1ryp | I | 135 | 155 | MAVLESHWKQDLTKEEAIKLA | HHHHHHH--SS--HHHHHHHH | aaaaaaaxbxvxxaaaaaaaa |
1ryp_J_134 | 1ryp | J | 138 | 158 | FGMCESLYEPNLEPEDLFETI | HHHHHHH--SS--HHHHHHHH | aaaaaaaxbxlxxaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ryp_J_134 | 1ryp | J | MGMAGNESIUM ION | S - 134 |
1ryp_J_134 | 1ryp | J | MGMAGNESIUM ION | D - 135 |
1ryp_H_135 | 1ryp | H | MGMAGNESIUM ION | A - 162 |
1ryp_I_131 | 1ryp | I | MGMAGNESIUM ION | G - 162 |
1ryp_H_135 | 1ryp | H | MGMAGNESIUM ION | I - 163 |
1ryp_H_135 | 1ryp | H | MGMAGNESIUM ION | K - 164 |
1ryp_I_131 | 1ryp | I | MGMAGNESIUM ION | W - 164 |
1ryp_H_135 | 1ryp | H | MGMAGNESIUM ION | W - 165 |
1ryp_I_131 | 1ryp | I | MGMAGNESIUM ION | N - 165 |
1ryp_J_134 | 1ryp | J | MGMAGNESIUM ION | A - 165 |
1ryp_J_134 | 1ryp | J | MGMAGNESIUM ION | A - 166 |
Clusters included in this Subclass |
CLUSTER: HH.7.43 |