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Information on SUBCLASS 6.5.1
Subclass Accession number: 9134
Subclass: 6.5.1 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 10.0 +/- 12.1
Average RMSD (Å) : 1.120 +/- 0.356

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: XXpXXXhpXX
(φψ)-conformation: aapappbpaa
Pattern: x[EL]x[EKL][AEQR][ACDGN][AGKQR]xx[EKSY][AEPT]x[EKQT][FLTV]x[EKRS]xx[hkr]x[cek]
Conservation:-1.2682.333-1.235-0.0361.023-0.784-0.179-1.3280.8480.3160.202-0.6141.3030.3910.2901.264-0.844-1.0550.699-0.602-0.722
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1iru_J_571iru   J7494YELKEGRQIKPYTLMSMVANLHHHHSSS---HHHHHHHHHHHaaaaxabbpxaaaaaaaaaaa
1k4m_A_751k4m   A7595RELKRNAPSYTAQTLKEWRQEHHHH-SS---HHHHHHHHHHHaaaapaxxbbaaaaaaaaaaa
1nup_A_831nup   A83103WESEQAQWMETVKVLRHHHSKHHHHSSS---HHHHHHHHHHHaaaaxabpbpaaaaaaaaaaa
1o08_A_10491o08   A10561076ILDLADKKVSAEEFKELAKRKHHTTSSS---HHHHHHHHHHHaaaabaxxxxaaaaaaaaaaa
1q44_A_2351q44   A243263AEFLECGFIEEEEVREIVKLCHHHH-SS---HHHHHHHHHHHaaaabaxxbxaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1iru_J_571iru   J     MGMAGNESIUM ION Q - 61
1iru_J_571iru   J     MGMAGNESIUM ION Q - 65
1k4m_A_751k4m   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE E - 76
1k4m_A_751k4m   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 83
1k4m_A_751k4m   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Y - 84
1k4m_A_751k4m   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 85
1k4m_A_751k4m   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 86
1nup_A_831nup   A     NMNBETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE E - 84
1nup_A_831nup   A     NMNBETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE W - 90
1nup_A_831nup   A     NMNBETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE M - 91
1nup_A_831nup   A     NMNBETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE E - 92
1nup_A_831nup   A     NMNBETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE T - 93
1nup_A_831nup   A     NMNBETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE V - 94
1o08_A_10491o08   A     G16ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE R - 1049
1o08_A_10491o08   A     G16ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE S - 1052
1o08_A_10491o08   A     G16ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE K - 1076
1o08_A_10491o08   A     G16ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE N - 1077
1o08_A_10491o08   A     G16ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE Y - 1080

Clusters included in this Subclass
CLUSTER: HH.7.20