ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 6.16.1

Subclass Accession number: 9145
Subclass: 6.16.1

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 3

Average sequence ID (%) : 58.3 +/- -2.4
Average RMSD (Å) : 0.233 +/- 0.058

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 90-135

rho (°): 45-90

Consensus Sequence:	hhpGXpCXXX
(φψ)-conformation:	aalglpbbaa

Pattern:	[F]	[DP]	[V]	[L]	[D]	[D]	[IL]	[Q]	[AQT]	[N]	[FLM]	[FY]	[HQ]	[G]	[GS]	[KQ]	[C]	[EG]	[AS]	[EP]	[AV]	[HR]	[EK]	x	[IL]	[R]	[ILM]	[V]	[F]	[H]	[D]	[AS]
Conservation:	1.022	-0.605	-0.000	-0.000	1.022	1.022	-0.507	0.511	-1.477	1.022	-0.966	0.368	-0.303	1.022	-0.712	-0.503	2.556	-1.113	-0.761	-0.798	-1.015	-0.303	-0.503	-1.591	-0.487	0.511	-0.739	-0.000	1.022	2.045	1.022	-0.761

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1llp_*_16	1llp	-	18	49	FDVLDDIQANMFHGGQCGAEAHESIRLVFHDS	HHHHHHHHHHTSTTT--SHHHHHHHHHHHHHH	aaaaaaaaaaaalvvxbbaaaaaaaaaaaaaa
1lyc_A_25	1lyc	A	26	57	FDVLDDLQTNFYQGSKCESPVRKILRIVFHDA	HHHHHHHHHTTTTTT--SHHHHHHHHHHHHHH	aaaaaaaaaaaalglxbbaaaaaaaaaaaaaa
1qpa_A_18	1qpa	A	18	49	FPVLDDIQQNLFHGGQCGAEAHEALRMVFHDS	HHHHHHHHHHTSTTT--SHHHHHHHHHHHHHH	aaaaaaaaaaaalvvxxbaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1llp_*_16	1llp	*	HEMPROTOPORPHYRIN IX CONTAINING FE	A - 36
1llp_*_16	1llp	*	HEMPROTOPORPHYRIN IX CONTAINING FE	A - 38
1llp_*_16	1llp	*	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 39
1llp_*_16	1llp	*	CACALCIUM ION	H - 39
1llp_*_16	1llp	*	HEMPROTOPORPHYRIN IX CONTAINING FE	E - 40
1llp_*_16	1llp	*	CACALCIUM ION	E - 40
1llp_*_16	1llp	*	HEMPROTOPORPHYRIN IX CONTAINING FE	I - 42
1llp_*_16	1llp	*	CACALCIUM ION	I - 42
1llp_*_16	1llp	*	HEMPROTOPORPHYRIN IX CONTAINING FE	R - 43
1llp_*_16	1llp	*	CACALCIUM ION	R - 43
1llp_*_16	1llp	*	HEMPROTOPORPHYRIN IX CONTAINING FE	V - 45
1llp_*_16	1llp	*	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 46
1llp_*_16	1llp	*	CACALCIUM ION	F - 46
1llp_*_16	1llp	*	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 47
1llp_*_16	1llp	*	CACALCIUM ION	H - 47
1llp_*_16	1llp	*	CACALCIUM ION	D - 48
1llp_*_16	1llp	*	CACALCIUM ION	S - 49
1lyc_A_25	1lyc	A	HEMPROTOPORPHYRIN IX CONTAINING FE	S - 44
1lyc_A_25	1lyc	A	HEMPROTOPORPHYRIN IX CONTAINING FE	V - 46
1lyc_A_25	1lyc	A	CACALCIUM ION	R - 47
1lyc_A_25	1lyc	A	HEMPROTOPORPHYRIN IX CONTAINING FE	R - 47
1lyc_A_25	1lyc	A	CACALCIUM ION	K - 48
1lyc_A_25	1lyc	A	HEMPROTOPORPHYRIN IX CONTAINING FE	K - 48
1lyc_A_25	1lyc	A	CACALCIUM ION	L - 50
1lyc_A_25	1lyc	A	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 50
1lyc_A_25	1lyc	A	CACALCIUM ION	R - 51
1lyc_A_25	1lyc	A	HEMPROTOPORPHYRIN IX CONTAINING FE	R - 51
1lyc_A_25	1lyc	A	CACALCIUM ION	V - 53
1lyc_A_25	1lyc	A	HEMPROTOPORPHYRIN IX CONTAINING FE	V - 53
1lyc_A_25	1lyc	A	CACALCIUM ION	F - 54
1lyc_A_25	1lyc	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 54
1lyc_A_25	1lyc	A	CACALCIUM ION	H - 55
1lyc_A_25	1lyc	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 55
1lyc_A_25	1lyc	A	CACALCIUM ION	D - 56
1lyc_A_25	1lyc	A	CACALCIUM ION	A - 57
1qpa_A_18	1qpa	A	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 42
1qpa_A_18	1qpa	A	CACALCIUM ION	L - 42

Clusters included in this Subclass

CLUSTER: HH.8.35