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Information on SUBCLASS 6.17.1
Subclass Accession number: 9146
Subclass: 6.17.1 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 66.7 +/- -18.3
Average RMSD (Å) : 0.233 +/- 0.058

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: AYXXhAGEAA
(φψ)-conformation: aalpppSbaa
Pattern: [QT][MT][SY][R][W][AS][A][M][Q][I][AG][M][S][FM][I][CS][A][Y][AK]x[AC][A][G][E][A][A][TV][AGS][D][FL][AS][FY][A][AS]
Conservation:-0.924-0.924-1.1610.6233.782-0.6740.0970.6230.6230.097-0.5900.6230.097-0.4860.097-0.7100.0971.676-1.020-1.424-0.4520.0971.1500.6230.0970.097-0.837-1.0731.150-0.590-0.6770.4730.097-0.677
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1e6v_A_2231e6v   A225258TMYRWAAMQIAMSFICAYKIAAGEAAVSDFAFASHHHHHHHHHHHHHHHHHHT--SS-TTHHHHHHHHaaaaaaaaaaaaaaaaaalxxxSbaaaaaaaaaa
1e6y_A_12361e6y   A12361269QTSRWAAMQIGMSFISAYAMCAGEAAVADLSFAAHHHHHHHHHHHHHHHHHTT--TT-HHHHHHHHHHaaaaaaaaaaaaaaaaaalxxxSbaaaaaaaaaa
1hbn_A_2221hbn   A222255TTSRWSAMQIGMSMISAYKQAAGEAATGDFAYAAHHHHHHHHHHHHHHHHHHT--TT-HHHHHHHHHHaaaaaaaaaaaaaaaaaavxpxSbaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e6v_A_2231e6v   A     TP7PHOSPHORIC ACID N-(1-HYDROXY-7-MERCAPTO-HEPTYL) THREONINE ESTER Y - 227
1e6v_A_2231e6v   A     TP7PHOSPHORIC ACID N-(1-HYDROXY-7-MERCAPTO-HEPTYL) THREONINE ESTER R - 228
1e6v_A_2231e6v   A     F43FACTOR 430 M - 232
1e6v_A_2231e6v   A     TP7PHOSPHORIC ACID N-(1-HYDROXY-7-MERCAPTO-HEPTYL) THREONINE ESTER M - 232
1e6v_A_2231e6v   A     F43FACTOR 430 Q - 233
1e6v_A_2231e6v   A     F43FACTOR 430 M - 236
1e6v_A_2231e6v   A     F43FACTOR 430 I - 239
1e6v_A_2231e6v   A     F43FACTOR 430 A - 246
1e6v_A_2231e6v   A     COM1-THIOETHANESULFONIC ACID A - 246
1e6v_A_2231e6v   A     F43FACTOR 430 G - 247
1e6v_A_2231e6v   A     COM1-THIOETHANESULFONIC ACID G - 247
1e6v_A_2231e6v   A     TP7PHOSPHORIC ACID N-(1-HYDROXY-7-MERCAPTO-HEPTYL) THREONINE ESTER A - 255
1e6v_A_2231e6v   A     TP7PHOSPHORIC ACID N-(1-HYDROXY-7-MERCAPTO-HEPTYL) THREONINE ESTER F - 256
1e6v_A_2231e6v   A     TP7PHOSPHORIC ACID N-(1-HYDROXY-7-MERCAPTO-HEPTYL) THREONINE ESTER K - 259
1e6y_A_12361e6y   A     AGM4-METHYL-ARGININE R - 1239
1e6y_A_12361e6y   A     TP7PHOSPHORIC ACID N-(1-HYDROXY-7-MERCAPTO-HEPTYL) THREONINE ESTER R - 1239
1e6y_A_12361e6y   A     F43FACTOR 430 M - 1243
1e6y_A_12361e6y   A     TP7PHOSPHORIC ACID N-(1-HYDROXY-7-MERCAPTO-HEPTYL) THREONINE ESTER M - 1243
1e6y_A_12361e6y   A     F43FACTOR 430 Q - 1244
1e6y_A_12361e6y   A     F43FACTOR 430 M - 1247
1e6y_A_12361e6y   A     F43FACTOR 430 I - 1250
1e6y_A_12361e6y   A     F43FACTOR 430 A - 1257
1e6y_A_12361e6y   A     COM1-THIOETHANESULFONIC ACID A - 1257
1e6y_A_12361e6y   A     F43FACTOR 430 G - 1258
1e6y_A_12361e6y   A     COM1-THIOETHANESULFONIC ACID G - 1258
1e6y_A_12361e6y   A     F43FACTOR 430 V - 1262
1e6y_A_12361e6y   A     MHSN1-METHYLATED HISTIDINE S - 1266
1e6y_A_12361e6y   A     TP7PHOSPHORIC ACID N-(1-HYDROXY-7-MERCAPTO-HEPTYL) THREONINE ESTER S - 1266
1e6y_A_12361e6y   A     MHSN1-METHYLATED HISTIDINE F - 1267
1e6y_A_12361e6y   A     TP7PHOSPHORIC ACID N-(1-HYDROXY-7-MERCAPTO-HEPTYL) THREONINE ESTER F - 1267
1e6y_A_12361e6y   A     MHSN1-METHYLATED HISTIDINE A - 1268
1e6y_A_12361e6y   A     MHSN1-METHYLATED HISTIDINE A - 1269
1hbn_A_2221hbn   A     GOLGLYCEROL S - 224
1hbn_A_2221hbn   A     AGM4-METHYL-ARGININE R - 225
1hbn_A_2221hbn   A     TP7PHOSPHORIC ACID N-(1-HYDROXY-7-MERCAPTO-HEPTYL) THREONINE ESTER R - 225
1hbn_A_2221hbn   A     GOLGLYCEROL R - 225
1hbn_A_2221hbn   A     GOLGLYCEROL A - 228
1hbn_A_2221hbn   A     F43FACTOR 430 M - 229
1hbn_A_2221hbn   A     TP7PHOSPHORIC ACID N-(1-HYDROXY-7-MERCAPTO-HEPTYL) THREONINE ESTER M - 229
1hbn_A_2221hbn   A     F43FACTOR 430 Q - 230
1hbn_A_2221hbn   A     F43FACTOR 430 M - 233
1hbn_A_2221hbn   A     F43FACTOR 430 I - 236
1hbn_A_2221hbn   A     F43FACTOR 430 A - 243
1hbn_A_2221hbn   A     COM1-THIOETHANESULFONIC ACID A - 243
1hbn_A_2221hbn   A     F43FACTOR 430 G - 244
1hbn_A_2221hbn   A     COM1-THIOETHANESULFONIC ACID G - 244
1hbn_A_2221hbn   A     F43FACTOR 430 T - 248
1hbn_A_2221hbn   A     MHSN1-METHYLATED HISTIDINE A - 252
1hbn_A_2221hbn   A     TP7PHOSPHORIC ACID N-(1-HYDROXY-7-MERCAPTO-HEPTYL) THREONINE ESTER A - 252
1hbn_A_2221hbn   A     MHSN1-METHYLATED HISTIDINE Y - 253
1hbn_A_2221hbn   A     TP7PHOSPHORIC ACID N-(1-HYDROXY-7-MERCAPTO-HEPTYL) THREONINE ESTER Y - 253
1hbn_A_2221hbn   A     MHSN1-METHYLATED HISTIDINE A - 254
1hbn_A_2221hbn   A     MHSN1-METHYLATED HISTIDINE A - 255
1hbn_A_2221hbn   A     GOLGLYCEROL A - 255
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e6v_A_2231e6v   A AC5TP7 BINDING SITE FOR CHAIN D SYMMETRY RELATED SUBUNITS CONTRIBUTE TO THE BINDING SITER - 228
1e6v_A_2231e6v   A AC1F43 BINDING SITE FOR CHAIN A THE SUBUNITS D, E, F CONTRIBUTE TO THE BINDING SITE THE ENZYME COMPLEX BINDS TIGHTLY (BUT NOT COVALENTLY) TO COENZYME F430Q - 233
1e6v_A_2231e6v   A AC1F43 BINDING SITE FOR CHAIN A THE SUBUNITS D, E, F CONTRIBUTE TO THE BINDING SITE THE ENZYME COMPLEX BINDS TIGHTLY (BUT NOT COVALENTLY) TO COENZYME F430M - 236
1e6v_A_2231e6v   A AC1F43 BINDING SITE FOR CHAIN A THE SUBUNITS D, E, F CONTRIBUTE TO THE BINDING SITE THE ENZYME COMPLEX BINDS TIGHTLY (BUT NOT COVALENTLY) TO COENZYME F430A - 246
1e6v_A_2231e6v   A AC5TP7 BINDING SITE FOR CHAIN D SYMMETRY RELATED SUBUNITS CONTRIBUTE TO THE BINDING SITEK - 259
1e6y_A_12361e6y   A AC2F43 BINDING SITE FOR CHAIN AQ - 1244
1e6y_A_12361e6y   A AC2F43 BINDING SITE FOR CHAIN AA - 1257
1hbn_A_2221hbn   A AC4TP7 BINDING SITE FOR CHAIN DR - 225
1hbn_A_2221hbn   A AC1F43 BINDING SITE FOR CHAIN DQ - 230
1hbn_A_2221hbn   A AC1F43 BINDING SITE FOR CHAIN DM - 233
1hbn_A_2221hbn   A AC1F43 BINDING SITE FOR CHAIN DA - 243

Clusters included in this Subclass
CLUSTER: HH.7.72