ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 6.25.1

Subclass Accession number: 9154
Subclass: 6.25.1

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 3

Average sequence ID (%) : 23.5 +/- 27.8
Average RMSD (Å) : 0.833 +/- 0.321

Consensus geometry

d (Å): 17

delta (°): 90-135

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	LhXXXXhppp
(φψ)-conformation:	aalpabbpaa

Pattern:	[FG]	[EP]	[GW]	[AV]	[AD]	x	[AFG]	[LTV]	[IV]	[L]	[CFY]	[GNQ]	[IT]	[AR]	x	[IPV]	[DS]	[DNS]	[DQS]	x	[FI]	[AL]	[EFL]	[AY]	[AR]	[KL]	[AKL]
Conservation:	-0.240	1.033	1.204	0.215	-0.486	-0.668	-1.335	-0.476	1.813	2.346	0.383	-0.476	-0.006	0.072	0.707	-0.721	1.321	0.383	-0.230	-1.457	0.994	-0.317	-1.703	-0.303	-0.135	-0.461	-1.457

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1nd4_A_234	1nd4	A	234	260	GEWADRFLVLYGIAAPDSQRIAFYRLL	HHHHHHHHHHHT-SS--HHHHHHHHHH	aaaaaaaaaaagbabpxaaaaaaaaaa
1o0s_A_483	1o0s	A	483	509	FPGVALGTILFQIRHVDNDLFLLAAKK	HHHHHHHHHHHTBS---HHHHHHHHHH	aaaaaaaaaaalxabbbaaaaaaaaaa
1pj3_A_471	1pj3	A	471	497	FPGVALAVILCNTRHISDSVFLEAAKA	HHHHHHHHHHTT-S---HHHHHHHHHH	aaaaaaaaaaalxabbxaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1nd4_A_234	1nd4	A	KANKANAMYCIN A	R - 258
1pj3_A_471	1pj3	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	L - 476
1pj3_A_471	1pj3	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	I - 479
1pj3_A_471	1pj3	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	L - 480
1pj3_A_471	1pj3	A	MSESELENOMETHIONINE	C - 481
1pj3_A_471	1pj3	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	C - 481
1pj3_A_471	1pj3	A	MSESELENOMETHIONINE	N - 482
1pj3_A_471	1pj3	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	N - 482
1pj3_A_471	1pj3	A	MSESELENOMETHIONINE	T - 483
1pj3_A_471	1pj3	A	MSESELENOMETHIONINE	R - 484
1pj3_A_471	1pj3	A	MSESELENOMETHIONINE	H - 485
1pj3_A_471	1pj3	A	MSESELENOMETHIONINE	I - 486
1pj3_A_471	1pj3	A	MSESELENOMETHIONINE	S - 487
1pj3_A_471	1pj3	A	MSESELENOMETHIONINE	D - 488
1pj3_A_471	1pj3	A	MSESELENOMETHIONINE	S - 489
1pj3_A_471	1pj3	A	MSESELENOMETHIONINE	V - 490
1pj3_A_471	1pj3	A	MSESELENOMETHIONINE	L - 492

Clusters included in this Subclass