ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 7.11.1

Subclass Accession number: 9169
Subclass: 7.11.1

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 3

Average sequence ID (%) : 23.1 +/- 20.5
Average RMSD (Å) : 0.400 +/- 0.173

Consensus geometry

d (Å): 13

delta (°): 45-90

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	XXXXchcXDXX
(φψ)-conformation:	aapplFpapaa

Pattern:	[I]	[DH]	[AR]	x	[IV]	[AST]	[EGQ]	x	[LMV]	x	[AQR]	[AT]	[HI]	[MTV]	[GN]	[ACM]	[DN]	x	[D]	[DP]	[DTV]	x	[L]	[AIV]	[EFL]	[GRS]	[AGV]	x	[MR]	[TV]	[AC]	[ALM]	[A]	[DK]	x	[DET]	[GL]	[AES]	x
Conservation:	1.596	0.846	-0.173	-0.668	1.233	-0.090	-0.534	-0.977	0.265	-0.889	-0.534	0.481	0.173	-0.356	0.930	-0.356	1.307	-1.421	3.193	0.857	-0.977	-0.436	1.596	-0.179	-1.332	-0.800	-0.889	-0.977	0.131	0.204	0.671	-0.445	1.596	0.436	-1.066	-0.179	-0.813	-0.445	-0.977

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1gnl_A_60	1gnl	A	62	100	IDRLVTGNLFATITNANFDDDILAERVRMTCAAKKELAA	HHHHHHHHHHHTSTTTB--HHHHHHHHHHHHHHHHHHHH	aaaaaaaaaaaaxpvabaxaaaaaaaaaaaaaaaaaaaa
1jqk_A_190	1jqk	A	190	228	IDASVAQTMSRTHVGCDADPTNLILGGLRVAMADLDGSM	HHHHHHHHHHHTSTTS---HHHHHHHHHHHHHHHHHHHH	aaaaaaaaaaaaxpvFxaxaaaaaaaaaaaaaaaaaaaa
1oao_A_208	1oao	A	208	246	IHASISELVNQAHMGMDNDPVNLVFSAIRVALADYTGEH	HHHHHHHHHHHTSTTS---HHHHHHHHHHHHHHHHHHHH	aaaaaaaaaaaappvFxabaaaaaaaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1gnl_A_60	1gnl	A	FS4IRON/SULFUR CLUSTER	I - 74
1gnl_A_60	1gnl	A	FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER	I - 74
1gnl_A_60	1gnl	A	FS4IRON/SULFUR CLUSTER	T - 75
1gnl_A_60	1gnl	A	FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER	T - 75
1gnl_A_60	1gnl	A	FS4IRON/SULFUR CLUSTER	N - 76
1gnl_A_60	1gnl	A	FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER	N - 76
1jqk_A_190	1jqk	A	SF4IRON/SULFUR CLUSTER	H - 202
1jqk_A_190	1jqk	A	WCCFE(3)-NI(1)-S(4) CLUSTER	H - 202
1jqk_A_190	1jqk	A	FE2FE (II) ION	V - 203
1jqk_A_190	1jqk	A	SF4IRON/SULFUR CLUSTER	V - 203
1jqk_A_190	1jqk	A	WCCFE(3)-NI(1)-S(4) CLUSTER	V - 203
1jqk_A_190	1jqk	A	SF4IRON/SULFUR CLUSTER	G - 204
1oao_A_208	1oao	A	SF4IRON/SULFUR CLUSTER	A - 219
1oao_A_208	1oao	A	SF4IRON/SULFUR CLUSTER	H - 220
1oao_A_208	1oao	A	XCCFE(4)-NI(1)-S(4) CLUSTER	H - 220
1oao_A_208	1oao	A	FE2FE (II) ION	H - 220
1oao_A_208	1oao	A	SF4IRON/SULFUR CLUSTER	M - 221
1oao_A_208	1oao	A	XCCFE(4)-NI(1)-S(4) CLUSTER	M - 221
1oao_A_208	1oao	A	FE2FE (II) ION	M - 221
1oao_A_208	1oao	A	SF4IRON/SULFUR CLUSTER	G - 222

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1oao_A_208	1oao	A	AC1SF4 BINDING SITE FOR CHAIN A	M - 221

Clusters included in this Subclass