ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 8.7.1

Subclass Accession number: 9181
Subclass: 8.7.1

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 4

Average sequence ID (%) : 35.3 +/- 33.1
Average RMSD (Å) : 1.025 +/- 0.050

Consensus geometry

d (Å): 17

delta (°): 135-180

theta (°): 45-90

rho (°): 315-360

Consensus Sequence:	XXhpXhXpXpXp
(φψ)-conformation:	aagbppabapaa

Pattern:	x	[l]	[dkr]	x	[eqy]	[kl]	[ek]	x	[aqr]	[fg]	[sty]	x	[fl]	x	[st]	x	[st]	x	[et]	[es]	[v]	[ail]	[aq]	[h]	[el]	[itv]
Conservation:	-0.625	1.261	-0.275	-0.694	-0.206	-0.431	0.743	-1.113	-0.415	-0.159	-0.555	-0.764	0.547	-0.834	0.479	-0.904	0.483	-0.643	0.105	0.309	1.261	-0.415	-0.134	3.774	-0.728	-0.066

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ao0_A_108	1ao0	A	110	135	QLKQQLENQGSIFQTSSDTEVLAHLI	HHHHHHHHTT----SS-HHHHHHHHH	aaaaaaaaagxxbabaxaaaaaaaaa
1gdo_A_104	1gdo	A	106	131	PLREELKARGYTFVSETDTEVIAHLV	HHHHHHHHTT----S--SHHHHHHHH	aaaaaaaaagxbxabaxaaaaaaaaa
1noy_A_270	1noy	A	270	295	YLDLYKKFAFTNLPSFSLESVAQHET	HHHHHHHHT----S--SHHHHHHHHH	aaaaaaaaavbxbabaxaaaaaaaaa
1noy_B_270	1noy	B	270	295	YLDLYKKFAFTNLPSFSLESVAQHET	HHHHHHHH-----S--SHHHHHHHHH	aaaaaaaaalbbxabaxaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1noy_B_270	1noy	B	ZNZINC ION	E - 288

Clusters included in this Subclass