ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 11.6.1

Subclass Accession number: 9239
Subclass: 11.6.1

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 3

Average sequence ID (%) : 60.5 +/- -6.6
Average RMSD (Å) : 0.267 +/- 0.058

Consensus geometry

d (Å): 17

delta (°): 90-135

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	XHGQphLVGNpLpXh
(φψ)-conformation:	aalpababllbpbaa

Pattern:	[FL]	[P]	[AV]	[F]	[E]	[K]	[IV]	[L]	[KR]	[GS]	[H]	[G]	[Q]	[DS]	[FY]	[L]	[V]	[G]	[N]	[KQR]	[L]	[ST]	x	[AV]	[D]	[IV]	[HI]	[L]	[LV]	[EQ]	[LTV]	[IL]	[LY]	[AY]	[LV]	[E]	[E]	[FKL]
Conservation:	-0.564	1.868	-1.012	1.290	0.712	0.712	-0.153	0.133	-0.147	-0.777	2.447	1.290	0.712	-0.664	0.605	0.133	0.133	1.290	1.290	-0.702	0.133	-0.607	-1.411	-0.978	1.290	-0.153	-1.174	0.133	-0.697	-0.147	-1.345	-0.439	-0.978	-1.062	-0.726	0.712	0.712	-1.859

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1f3a_A_131	1f3a	A	132	169	LPAFEKVLKSHGQDYLVGNRLTRVDIHLLEVLLYVEEF	HHHHHHHHHHH--SSSSTTS--HHHHHHHHHHHHHHHH	aaaaaaaaaaaUxababvlbxbaaaaaaaaaaaaaaaa
1gum_A_133	1gum	A	133	170	FPVFEKILRGHGQSFLVGNQLSLADVILLQTILALEEK	HHHHHHHHHTT--SSSSTTS--HHHHHHHHHHHHHHHH	aaaaaaaaaaavxababllbpbaaaaaaaaaaaaaaaa
1k3y_A_132	1k3y	A	133	170	FPAFEKVLKSHGQDYLVGNKLSRADIHLVELLYYVEEL	HHHHHHHHHHH--SSSSTTS--HHHHHHHHHHHHHHHH	aaaaaaaaaaavxababvlbpbaaaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Clusters included in this Subclass