ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 12.2.1

Subclass Accession number: 9245
Subclass: 12.2.1

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 4

Average sequence ID (%) : 34.6 +/- 22.9
Average RMSD (Å) : 0.500 +/- 0.216

Consensus geometry

d (Å): 13

delta (°): 45-90

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	hLGcpXhhXGXphpXh
(φψ)-conformation:	aaeapabaaeabpbaa

Pattern:	[AL]	[P]	x	x	[LM]	[KQ]	x	[FLWY]	[DS]	x	[FY]	[L]	[G]	[GK]	x	[EPS]	[WY]	[FL]	x	[G]	x	[KS]	[ILV]	[ST]	[FHW]	[AV]	[D]	[F]	[ILMY]	x	[EY]	x	[ACIV]	x	[DET]	[AQRT]	x	x	[IVY]	[FL]
Conservation:	-0.363	2.321	-1.097	-0.872	0.421	0.380	-1.097	-0.194	-0.025	-1.001	1.178	0.773	1.805	-0.246	-1.097	-0.459	2.208	-0.041	-1.130	1.805	-1.001	-0.144	0.115	0.360	-0.094	-0.136	1.805	1.805	-0.517	-1.033	0.165	-0.743	-0.614	-0.590	-0.227	-0.872	-0.979	-0.704	-0.251	0.387

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1hna_*_119	1hna	-	130	169	LPEMLKLYSQFLGKQPWFLGDKITFVDFIAYDVLERNQVF	HHHHHHHHHHHHTT-SBTTBSS--HHHHHHHHHHHHHHHH	aaaaaaaaaaaaeaxabaaeabxbaaaaaaaaaaaaaaaa
1iyh_A_124	1iyh	A	124	163	APHLMQDLDTYLGGREWLIGMSVTWADFYWEICSTTLLVF	HHHHHHHHHHHHTT-SSSSTTS--HHHHHHHHHHHHHHHH	aaaaaaaaaaaaeaxababeabxbaaaaaaaaaaaaaaaa
2fhe_A_114	2fhe	A	125	164	LPTTMKMWSDFLGKNPYLRGTSVSHVDFMVYEALDAIRYL	HHHHHHHHHHHHTT-SBTTBSS--HHHHHHHHHHHHHHHH	aaaaaaaaaaaaeaxabaaeabxbaaaaaaaaaaaaaaaa
3gtu_B_123	3gtu	B	134	173	LPGQLKQFSMFLGKFSWFAGEKLTFVDFLTYDILDQNRIF	HHHHHHHHHHHHTT-SBTTBSS--HHHHHHHHHHHHHHHH	aaaaaaaaaaaaeaxabaaeabxbaaaaaaaaaaaaaaaa

Clusters included in this Subclass