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PDB code:

Information on SUBCLASS 1.1.10

Subclass Accession number: 946 Subclass: 1.1.10 Type: EH beta-alpha DB: ArchDB40 Image coordinates: Consensus coordinates:

Number of loops: 34 Average sequence ID (%) : 8.7 +/- 11.2 Average RMSD (Å) : 0.491 +/- 0.166 Consensus geometry d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a26_*_857	1a26	-	861	872	WHGSRTTNFAGI	EEE--GGGHHHH	xbbbxaaaaaaa
1amu_A_139	1amu	A	139	150	MLLTQKHLVHLI	EEEE-GGGHHHH	bbxbbaaaaaaa
1b7g_O_50	1b7g	O	50	60	.IYVPQQSIKKF	.EE--GGGHHHH	.bbbpaaaaaaa
1bg6_*_78	1bg6	-	80	91	LIVVPAIHHASI	EE-S-GGGHHHH	bbbbxaaaaaaa
1bpy_A_253	1bpy	A	257	268	IRLIPKDQYYCG	EEE--GGGHHHH	bbxbpaaaaaaa
1cb6_A_1598	1cb6	A	1598	1609	AVVSRMDKVERL	EEEE-GGGHHHH	bxbbxaaaaaaa
1dbt_A_158	1dbt	A	158	169	GVVCSVHEAKAI	EEE--GGGHHHH	ebbbxaaaaaaa
1f7u_A_366	1f7u	A	368	379	IYVIASQQDLHA	EEE--GGGHHHH	bbxbpaaaaaaa
1i6l_A_140	1i6l	A	140	151	IVPVGEDQKQHI	EEE--GGGHHHH	bbxbxaaaaaaa
1j7x_A_281	1j7x	A	281	291	.AIVLADEALDK	.EE--GGGHHHH	.bxbxaaaaaaa
1jcl_A_45	1jcl	A	45	56	AICIYPRFIPIA	EEE--GGGHHHH	bbbbxaaaaaaa
1jms_A_428	1jms	A	435	446	LVMCPYDRRAFA	EEE--GGGHHHH	bbbbxaaaaaaa
1kkh_A_285	1kkh	A	288	299	IILVNEEKEKEL	EEE--GGGHHHH	bbxxbaaaaaaa
1kyh_A_57	1kyh	A	59	70	VIGTSENVIPLI	EEE--TTTHHHH	bbxbxaaaaaaa
1lst_*_44	1lst	-	47	58	WVASDFDALIPS	EEE--GGGHHHH	xbxbpaaaaaaa
1m6y_A_75	1m6y	A	77	88	LFKVSYREADFL	EEE--GGGHHHH	bbxbxaaaaaaa
1n55_A_38	1n55	A	40	51	VVAPTFVHIPLV	EEE--GGGHHHH	bbbebaaaaaaa
1nyt_A_33	1nyt	A	35	46	RVLAPINDFINT	EEE--TT-HHHH	bbxxwaaaaaaa
1o20_A_142	1o20	A	143	154	LLRGGSDALNSN	EEE--GGGHHHH	bbbxxaaaaaaa
1o6z_A_48	1o6z	A	50	61	VFVDIPDKEDDT	EEE--GGGHHHH	bxbbxaaaaaaa
1o7j_A_88	1o7j	A	90	101	VITHGTDTVEES	EEE--STTHHHH	bbxbxaaaaaaa
1on3_A_489	1on3	A	489	499	.DVIDPADTRRK	.EE--GGGHHHH	.bbbxaaaaaaa
1q52_A_231	1q52	A	231	242	NAVAEHAELETV	EEE-GGGHHHHH	abbbpaaaaaaa
1qam_A_97	1qam	A	99	110	FGNIPYNISTDI	EEE--GGGHHHH	bbxxxaaaaaaa
1qop_B_12	1qop	B	14	25	GMYVPQILMPAL	EEES-GGGHHHH	ebxbwaaaaaaa
1r9c_A_69	1r9c	A	71	82	AFKIDDADFDRY	EEE--GGGHHHH	bbxbxaaaaaaa
1ro7_A_44	1ro7	A	47	58	AVFYNPSLFFEQ	EEE--GGGHHHH	bbbbxaaaaaaa
1rzt_A_487	1rzt	A	491	502	IIVVPYSEFACA	EEE--GGGHHHH	bbbbxaaaaaaa
1s4n_A_123	1s4n	A	126	137	VTLVRNKELKGL	EEE--GGGHHHH	bbbbbaaaaaaa
1ub3_A_35	1ub3	A	35	46	GLCIPPSYVAWV	EEE--GGGHHHH	bbbbwaaaaaaa
1uch_*_191	1uch	-	193	204	HGETSDETLLED	EEE--TTTHHHH	aexbbaaaaaaa
1v8a_A_17	1v8a	A	19	30	HNITNFVVMNTT	EEE--TTTHHHH	xbbbxaaaaaaa
2dap_*_193	2dap	-	198	209	FVVADAADHERI	EEE--TTSHHHH	bbbbxaaaaaaa
7mdh_A_78	7mdh	A	81	92	KLLGSERSFQAL	EEE--GGGHHHH	bxbbxaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1bpy_A_253	1bpy	A	DOC2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE	R - 254
1bpy_A_253	1bpy	A	MGMAGNESIUM ION	R - 254
1bpy_A_253	1bpy	A	MGMAGNESIUM ION	I - 255
1bpy_A_253	1bpy	A	DOC2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE	D - 256
1bpy_A_253	1bpy	A	DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE	D - 256
1bpy_A_253	1bpy	A	MGMAGNESIUM ION	D - 256
1bpy_A_253	1bpy	A	DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE	L - 270
1bpy_A_253	1bpy	A	DOC2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE	Y - 271
1bpy_A_253	1bpy	A	DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE	Y - 271
1bpy_A_253	1bpy	A	DOC2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE	F - 272
1bpy_A_253	1bpy	A	DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE	F - 272
1bpy_A_253	1bpy	A	MGMAGNESIUM ION	F - 272
1bpy_A_253	1bpy	A	DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE	T - 273
1dbt_A_158	1dbt	A	U5PURIDINE-5'-MONOPHOSPHATE	V - 160
1dbt_A_158	1dbt	A	U5PURIDINE-5'-MONOPHOSPHATE	C - 161
1f7u_A_366	1f7u	A	ARGARGININE	Y - 369
1f7u_A_366	1f7u	A	ARGARGININE	V - 370
1f7u_A_366	1f7u	A	ARGARGININE	I - 371
1f7u_A_366	1f7u	A	ARGARGININE	Q - 375
1f7u_A_366	1f7u	A	ARGARGININE	H - 378
1f7u_A_366	1f7u	A	ARGARGININE	F - 382
1i6l_A_140	1i6l	A	MSESELENOMETHIONINE	V - 141
1i6l_A_140	1i6l	A	TYMTRYPTOPHANYL-5'AMP	V - 141
1i6l_A_140	1i6l	A	TYMTRYPTOPHANYL-5'AMP	P - 142
1i6l_A_140	1i6l	A	MSESELENOMETHIONINE	V - 143
1i6l_A_140	1i6l	A	TYMTRYPTOPHANYL-5'AMP	V - 143
1i6l_A_140	1i6l	A	TYMTRYPTOPHANYL-5'AMP	G - 144
1i6l_A_140	1i6l	A	TYMTRYPTOPHANYL-5'AMP	E - 145
1i6l_A_140	1i6l	A	TYMTRYPTOPHANYL-5'AMP	D - 146
1i6l_A_140	1i6l	A	MSESELENOMETHIONINE	Q - 147
1i6l_A_140	1i6l	A	TYMTRYPTOPHANYL-5'AMP	Q - 147
1i6l_A_140	1i6l	A	MSESELENOMETHIONINE	Q - 149
1i6l_A_140	1i6l	A	MSESELENOMETHIONINE	H - 150
1i6l_A_140	1i6l	A	TYMTRYPTOPHANYL-5'AMP	H - 150
1i6l_A_140	1i6l	A	MSESELENOMETHIONINE	I - 151
1i6l_A_140	1i6l	A	TYMTRYPTOPHANYL-5'AMP	I - 151
1i6l_A_140	1i6l	A	MSESELENOMETHIONINE	L - 153
1i6l_A_140	1i6l	A	MSESELENOMETHIONINE	T - 154
1i6l_A_140	1i6l	A	MSESELENOMETHIONINE	F - 161
1i6l_A_140	1i6l	A	MSESELENOMETHIONINE	Y - 165
1jcl_A_45	1jcl	A	HPD1-HYDROXY-PENTANE-3,4-DIOL-5-PHOSPHATE	C - 47
1jms_A_428	1jms	A	MGMAGNESIUM ION	R - 432
1jms_A_428	1jms	A	MGMAGNESIUM ION	D - 434
1jms_A_428	1jms	A	MGMAGNESIUM ION	W - 450
1kyh_A_57	1kyh	A	MSESELENOMETHIONINE	K - 57
1kyh_A_57	1kyh	A	MSESELENOMETHIONINE	L - 58
1kyh_A_57	1kyh	A	MSESELENOMETHIONINE	V - 66
1m6y_A_75	1m6y	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	V - 80
1m6y_A_75	1m6y	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	S - 81
1m6y_A_75	1m6y	A	MSESELENOMETHIONINE	Y - 82
1m6y_A_75	1m6y	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	Y - 82
1m6y_A_75	1m6y	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	R - 83
1n55_A_38	1n55	A	GOLGLYCEROL	F - 45
1nyt_A_33	1nyt	A	DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE	Y - 33
1o20_A_142	1o20	A	MSESELENOMETHIONINE	L - 143
1o20_A_142	1o20	A	MSESELENOMETHIONINE	L - 144
1o20_A_142	1o20	A	MSESELENOMETHIONINE	R - 145
1o20_A_142	1o20	A	MSESELENOMETHIONINE	I - 157
1o6z_A_48	1o6z	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	V - 52
1o6z_A_48	1o6z	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	D - 53
1o6z_A_48	1o6z	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	I - 54
1qam_A_97	1qam	A	ACTACETATE ION	T - 108
1r9c_A_69	1r9c	A	MNMANGANESE (II) ION	H - 69
1r9c_A_69	1r9c	A	MNMANGANESE (II) ION	A - 71
1ro7_A_44	1ro7	A	MSESELENOMETHIONINE	A - 47
1ro7_A_44	1ro7	A	MSESELENOMETHIONINE	V - 48
1ro7_A_44	1ro7	A	MSESELENOMETHIONINE	F - 49
1ro7_A_44	1ro7	A	MSESELENOMETHIONINE	Y - 50
1ro7_A_44	1ro7	A	CSFCYTIDINE-5'-MONOPHOSPHATE-3-FLUORO-N-ACETYL-NEURAMINIC ACID	Y - 50
1ro7_A_44	1ro7	A	MSESELENOMETHIONINE	N - 51
1ro7_A_44	1ro7	A	CSFCYTIDINE-5'-MONOPHOSPHATE-3-FLUORO-N-ACETYL-NEURAMINIC ACID	N - 51
1ro7_A_44	1ro7	A	CSFCYTIDINE-5'-MONOPHOSPHATE-3-FLUORO-N-ACETYL-NEURAMINIC ACID	S - 53
1ro7_A_44	1ro7	A	CSFCYTIDINE-5'-MONOPHOSPHATE-3-FLUORO-N-ACETYL-NEURAMINIC ACID	L - 54
1ro7_A_44	1ro7	A	MSESELENOMETHIONINE	F - 55
1ro7_A_44	1ro7	A	CSFCYTIDINE-5'-MONOPHOSPHATE-3-FLUORO-N-ACETYL-NEURAMINIC ACID	Q - 58
1s4n_A_123	1s4n	A	GOLGLYCEROL	K - 132
1s4n_A_123	1s4n	A	GOLGLYCEROL	E - 133
1ub3_A_35	1ub3	A	HPD1-HYDROXY-PENTANE-3,4-DIOL-5-PHOSPHATE	C - 37
2dap_*_193	2dap	*	API2,6-DIAMINOPIMELIC ACID	R - 195

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1bpy_A_253	1bpy	A	ACTACTIVE SITE OF NUCLEOTIDYL TRANSFER.	D - 256
2dap_*_193	2dap	*	DAPDIAMINOPIMELATE BINDING SITE.	R - 195

Clusters included in this Subclass

CLUSTER: EH.4.189

CLUSTER: EH.4.278

CLUSTER: EH.4.42

CLUSTER: EH.4.56

CLUSTER: EH.5.134

CLUSTER: EH.5.186

CLUSTER: EH.5.295

CLUSTER: EH.5.6

CLUSTER: EH.6.19

CLUSTER: EH.6.7

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