ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 1.3.2

Subclass Accession number: 97
Subclass: 1.3.2

PSSM

Type: HE alpha-beta
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 12

Average sequence ID (%) : 11.7 +/- 14.1
Average RMSD (Å) : 0.608 +/- 0.254

Consensus geometry

d (Å): 7

delta (°): 90-135

theta (°): 90-135

rho (°): 270-315

Consensus Sequence:	pXXXh
(φψ)-conformation:	aagbb

Pattern:	x	x	x	[dehkqr]	x	[EGQS]	x	[acfiklv]
Conservation:	-0.694	-0.546	-0.377	0.453	-0.581	2.310	-0.422	-0.144

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
12as_A_182	12as	A	189	196	IAKDLGAV	HHHHHSEE	aaaaagbb
1b65_A_90	1b65	A	92	99	WIEDGGYF	HHHHH-EE	aaaaavbb
1cz3_A_25	1cz3	A	34	41	ITTEIGNV	HHHHHTEE	aaaaavbb
1g8p_A_158	1g8p	A	166	173	DVAQSGEN	HHHHHSEE	aaaaavbb
1gai_*_318	1gai	-	334	341	QWDKQGSL	HHHHHTEE	aaaaavbb
1h4v_B_386	1h4v	B	387	394	DELRAGEV	HHHHHTEE	aaaaavbb
1hc7_A_352	1hc7	A	353	360	KDLEGGQA	HHHHTTEE	aaaaavbb
1jo0_A_32	1jo0	A	41	48	ALNHHELI	HHHHHSEE	aaaaagbb
1lwd_A_56	1lwd	A	64	71	ATQKYSVA	HHHHHSEE	aaaaavbb
1nv8_A_79	1nv8	A	79	86	LHYILGEK	HHHHHTEE	aaaaavbb
1oga_E_132	1oga	E	134	141	EISHTQKA	HHHHHSEE	aaaaavbb
1uou_A_170	1uou	A	176	183	LLDQAGCC	HHHHHSEE	aaaaavbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1gai_*_318	1gai	*	GACDIHYDRO-ACARBOSE	L - 319
1jo0_A_32	1jo0	A	GOLGLYCEROL	H - 44
1jo0_A_32	1jo0	A	GOLGLYCEROL	H - 45
1jo0_A_32	1jo0	A	GOLGLYCEROL	E - 46
1jo0_A_32	1jo0	A	GOLGLYCEROL	L - 47
1jo0_A_32	1jo0	A	GOLGLYCEROL	K - 49
1jo0_A_32	1jo0	A	GOLGLYCEROL	K - 51
1nv8_A_79	1nv8	A	SAMS-ADENOSYLMETHIONINE	F - 88

Clusters included in this Subclass

CLUSTER: HE.1.10