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Information on SUBCLASS 1.3.4
Subclass Accession number: 99
Subclass: 1.3.4 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 10.7 +/- 12.9
Average RMSD (Å) : 0.637 +/- 0.130

Consensus geometry
d (Å): 17 delta (°): 135-180 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: XhcXX
(φψ)-conformation: aagbb
Pattern: xxx[CLTVY][gm]xx[ilptv]xx[dehkqr]
Conservation:-0.639-0.391-0.9120.3872.580-0.532-0.277-0.203-0.684-0.2600.930
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b9h_A_1421b9h   A149159SADTGVPLLQDHHHHT--B-EEaaaavbxxbxx
1fp1_D_3171fp1   D330339FITVGGRERT.HHHHS---EE.aaaavxbxbx.
1g5b_A_2051g5b   A205215AVFCGNLTLIQHHHHS---EEEaaaagxbbbbx
1gkz_A_1971gkz   A213223EHKYGNAPRVRHHHHS----EEaaaavbbxxbb
1gs5_A_451gs5   A5262MKGLNLPVKKKHHHHT----EEaaaavbxbbbb
1jm6_A_11891jm6   A12051215DKYYMASPDLEHHHHS----EEaaaavbbxxbb
1mdo_A_1431mdo   A150160GERYGIPVIEDHHHHT--B-EEaaaavbpbbxx
1pmm_A_2201pmm   A231241QADTGIDIDMHHHHH-----EEaaaavxbbxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b9h_A_1421b9h   A     PLPPYRIDOXAL-5'-PHOSPHATE D - 159
1fp1_D_3171fp1   D     HCC2',4,4'-TRIHYDROXYCHALCONE L - 321
1fp1_D_3171fp1   D     HCC2',4,4'-TRIHYDROXYCHALCONE L - 325
1fp1_D_3171fp1   D     HCC2',4,4'-TRIHYDROXYCHALCONE L - 328
1fp1_D_3171fp1   D     HCC2',4,4'-TRIHYDROXYCHALCONE M - 329
1fp1_D_3171fp1   D     HCC2',4,4'-TRIHYDROXYCHALCONE T - 332
1fp1_D_3171fp1   D     HCC2',4,4'-TRIHYDROXYCHALCONE V - 333
1fp1_D_3171fp1   D     HCC2',4,4'-TRIHYDROXYCHALCONE E - 337
1g5b_A_2051g5b   A     HGMERCURY (II) ION A - 205
1g5b_A_2051g5b   A     HGMERCURY (II) ION F - 207
1g5b_A_2051g5b   A     HGMERCURY (II) ION C - 208
1g5b_A_2051g5b   A     HGMERCURY (II) ION G - 209
1g5b_A_2051g5b   A     HGMERCURY (II) ION N - 210
1gs5_A_451gs5   A     NLGN-ACETYL-L-GLUTAMATE G - 45
1gs5_A_451gs5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER G - 45
1gs5_A_451gs5   A     NLGN-ACETYL-L-GLUTAMATE C - 46
1gs5_A_451gs5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER C - 46
1gs5_A_451gs5   A     NLGN-ACETYL-L-GLUTAMATE V - 48
1gs5_A_451gs5   A     NLGN-ACETYL-L-GLUTAMATE D - 49
1gs5_A_451gs5   A     NLGN-ACETYL-L-GLUTAMATE K - 61
1gs5_A_451gs5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER K - 61
1mdo_A_1431mdo   A     MSESELENOMETHIONINE I - 158
1mdo_A_1431mdo   A     MSESELENOMETHIONINE E - 159
1mdo_A_1431mdo   A     MSESELENOMETHIONINE D - 160
1mdo_A_1431mdo   A     PMP4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE D - 160
1pmm_A_2201pmm   A     PLPPYRIDOXAL-5'-PHOSPHATE D - 243
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gs5_A_451gs5   A ANPANP BINDING SITE FOR CHAIN AG - 45

Clusters included in this Subclass
CLUSTER: HE.4.63