Proteins Interacting with the Query

Enter up to 10 sequences in FASTA format of proteins interacting with the query Protein(s) interacting with the query (if any is known) should be pasted in the text area in FASTA format. Up to 10 different sequences should be pasted in the text area. more... Clear

Nº of proteins Select the exact number of submitted proteins interacting with the query. 10987654321none

Or, upload file

Use the browse button to upload a file from your local disk containing your protein(s) interacting with the query. The file should contain up to 10 different sequences in FASTA format.

Algorithm Parameters

Combine with	PSI-BLASTHHSearchPRC Choose the extrapolation type Select the background method to detect similarities in SCOP (PSI-BLAST, HHSearch or PRC). more...
Extrapolation	by familyby superfamilyby foldno extrapolation Choose the extrapolation type Select the type of extrapolation of links (by family, superfamily or fold) or no extrapolation to skip this process. more...
MHS	no limit50010050403020105 Choose the maximum hub degree Select the maximum hub degree allowed during the extrapolation process or no limit. more...
EVTE	1e-121e-111e-101e-091e-081e-071e-061e-051e-041e-031e-021e-01110100 Choose the threshold e-value Select a threshold on the BLAST e-value to finish the extrapolation process. more...
EVTH	don't use1e-1001e-901e-801e-701e-601e-501e-401e-301e-201e-101e-091e-081e-071e-061e-051e-041e-031e-021e-01110100 Choose the threshold e-value Select a threshold on the BLAST e-value to assign putative proteins that interact with the query. more...

PSI-BLAST parameters

Nº of iterations

5432 Choose the maximum number iterations Select the maximum number of iterations to search against TrEMBL database to construct the PSSM profile of your query sequence.