PIANA distribution contains several directories and files compressed in a tar.gz file. Source code and documentation files are included in the distribution. If you want to use the limited piana database we provide, you'll need to download as well the mysql dump of pianaDB_limited.

PIANA code is under GNU General Public License By downloading the code you agree to the terms of that license.

file name	size	description	date
piana_v1.11.tar.gz	4.8MB	latest revision of PIANA v1.1	Mar 29 2006
piana_v1.038.tar.gz	4.8MB	last revision of PIANA v1.0	Feb 21 2006
pianaDB_limited.v1.037.mysqldump.gz	512MB	PIANA database populated with piana v1.037 (it is compatible with PIANA v1.1)	Feb 21 2006

Software versions description

• PIANA v1.1
  Parameters and commands available in this version are described in this file
  • Added PIANA parameter use-self-ints: allows the user to avoid using self-interactions (v1.11)
  • method PianaDBaccess.get_all_interactions has been removed: use instead get_all_partners (v1.11)
  • Added documentation on how to populate the PIANA database with the human interactome published on Nature and Cell (v1.11)
  • Corrected bug in pianaDB tables: embl accessions were truncated to 8 chars (Thanks to C. Winter) (v1.11)
  • Added PIANA command find-shortest-route (v1.1)
  • STRING parser modified to allow a faster execution and avoid ambiguities (v1.1)
  • Improved documentation, mainly on PIANA outputs and command usage (v1.1)


• PIANA v1.0 was the first public release of PIANA
  Parameters and commands available in this version are described in this file


• PIANA v1.038 is the latest revision made to v1.0
  
  • README.pythonpath corrected (directory for CirGraphCluster was incorrect) (Thanks to J. Huerta) (v1.038)
  • Added indexes to psi databases (increases parsing speed) (Thanks to C. Winter) (v1.038)
  • Root connectivity and number of neighbours information is now correctly printed to interaction tables (v1.037)
  • added index to column proteinDescription in table proteinDescription (v1.037)
    without this index, parser psi2piana.py is too slow
    if you have a PIANA database created with a version previous to v1.037, you should create an index on your database by doing:
    mysql> use your_pianaDB
    mysql> create index proteinDescription on proteinDescription (proteinDescription);
  • modifications made to psi2piana to make it faster. (Thanks to C. Winter) (v1.037)
  • there was a missing class in the previous release: ClusteredGraphGenerator (v1.036)
  • some documentantion has been added, mainly to README.piana_tutorial (v1.035)
  • corrected bug in psi2piana (bug was halting the parsing) (v1.033)
  • corrected bug in genpept2piana (bug was incorrectly getting the name of the protein) Thanks to W.K. Kim and C. Winter (v1.033)
  • corrected bug in nr2piana, pdbaa2piana and swissprot2piana (proteinSpecies table was not being updated) (v1.033)

• pianaDB_limited v1.037 is the PIANA limited database that has been populated using parsers from piana_v1.037
  The contents of this version are described in this file