| Accession | HsInv1071 | Region of the inversion | chr11:1879561-1926194 |
| Status | Predicted | Prediction type | Simple |
| Estimated Inversion Size | 20,456 bp | Supporting predictions | 6 |
| Inverted allele frequency | ND | Mechanism of origin | ND |
| Functional effect | Intergenic breakpoints | Breakpoint 1 | chr11:1879561-1909779 |
| Ancestral orientation | NA | Breakpoint 2 | chr11:1904056-1926194 |
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Human Polymorphic Inversion DataBase
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General information
- Region map
+ Predictions
| Description | Paired-end mapping analysis of the J. Craig Venter genome (HuRef) | ||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||
| Name | |||||||
| Breakpoint 1 | chr11:1893406-1895934 | Breakpoint 2 | chr11:1909821-1920429 | ||||
| Individuals |
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| Description | Paired-end mapping of 3-kb fragments in an African and in a putatively European individual with some predictions validated by PCR, fiber-FISH or comparison with Celera assembly | ||||||||||||||||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||||||||||||||||
| Name | |||||||||
| Breakpoint 1 | chr11:1872866-1872866 | Breakpoint 2 | chr11:1919497-1919497 | ||||||
| Individuals |
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| Name | |||||||||
| Breakpoint 1 | chr11:1872935-1872935 | Breakpoint 2 | chr11:1918372-1918372 | ||||||
| Individuals |
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- Martinez-Fundichely et al. 2014 (in preparation)
| Description | Accurate prediction of inversions in the human genome from Kidd et al. 2008 fosmid paired-end mapping data using the GRIAL algorithm, and validation of some predictions by sequence analysis and PCR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Name | |||||||||||||||||||||||
| Breakpoint 1 | chr11:1873181-1878178 | Breakpoint 2 | chr11:1898344-1922007 | ||||||||||||||||||||
| Individuals |
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| Name | |||||||||||||||||||||||
| Breakpoint 1 | chr11:1880497-1893541 | Breakpoint 2 | chr11:1905660-1938898 | ||||||||||||||||||||
| Individuals |
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| Name | |||||||||||||||||||||||
| Breakpoint 1 | chr11:1850614-1872337 | Breakpoint 2 | chr11:1907411-1932600 | ||||||||||||||||||||
| Individuals |
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+ Validation and genotyping
No validations are found
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chr11:1879561-1909779 | Breakpoint 2 | chr11:1904056-1926194 | ||
| Definition method | Default informatic definition | ||||
| Mechanism of origin |
ND
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| Flexibility | 9.31 | GC content | 0.64 | Stability | 2.25 |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
No genes disrupted by the inversion breakpoints
+ Inversion phenotypical effects
Not defined
+ Report history
- 2015-02-23 10:15:28
| Breakpoint 1 | chr11:1879561-1909779 | Breakpoint 2 | chr11:1904056-1926194 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
