| Accession | HsInv0252 | Region of the inversion | chr2:132230248-132280102 |
| Status | Predicted | Prediction type | Simple |
| Estimated Inversion Size | 40,015 bp | Supporting predictions | 1 |
| Inverted allele frequency | ND | Mechanism of origin | ND |
| Functional effect | Intergenic breakpoints | Breakpoint 1 | chr2:132230248-132243377 |
| Ancestral orientation | NA | Breakpoint 2 | chr2:132273552-132280102 |
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Human Polymorphic Inversion DataBase
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General information
- Region map
+ Predictions
- Martinez-Fundichely et al. 2014 (in preparation)
| Description | Accurate prediction of inversions in the human genome from Kidd et al. 2008 fosmid paired-end mapping data using the GRIAL algorithm, and validation of some predictions by sequence analysis and PCR | ||||||||||||||||||||||||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||||||||||||||||||||||||
| Name | |||||||||||||||||||||||
| Breakpoint 1 | chr2:132230248-132243377 | Breakpoint 2 | chr2:132273552-132280102 | ||||||||||||||||||||
| D/C Score | -3.56 | Disc. Support Prob. | 0.00036 | ||||||||||||||||||||
| Support | 5 probes  | ||||||||||||||||||||||
| Individuals |
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| Comments | Below the threshold of the Discordant/Concordant (D/C) ratio score. Below the threshold of the Discordant Support (DS) probability | ||||||||||||||||||||||
+ Validation and genotyping
-Martinez-Fundichely et al. 2014 (in preparation)
| Description | Accurate prediction of inversions in the human genome from Kidd et al. 2008 fosmid paired-end mapping data using the GRIAL algorithm, and validation of some predictions by sequence analysis and PCR | ||||
| Method | Inverse polymerase chain reaction (iPCR) |
| Status | Inconclusive |
| Comment | Probably false inversion tested by iPCR and supported by just a few fosmids with low reliability score |
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chr2:132230248-132243377 | Breakpoint 2 | chr2:132273552-132280102 | |||||||||||||
| Definition method | Default informatic definition | |||||||||||||||
| Mechanism of origin |
ND
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| Flexibility | 10.12 | GC content | 0.6 | Stability | 2.11 |
| Position SD1 | Size (bp) | Position SD2 | Size (bp) | Identity | Relative orientation |
| chr2:132235621-132245320 | 9,700 | chr2:132265187-132274824 | 9,638 | 0.991 | Inverted |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
No genes disrupted by the inversion breakpoints
+ Inversion phenotypical effects
Not defined
+ Report history
- 2015-02-23 10:14:31
| Breakpoint 1 | chr2:132230248-132243377 | Breakpoint 2 | chr2:132273552-132280102 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
