| Accession | HsInv0401 | Region of the inversion | chrX:52519881-52585253 |
| Status | Predicted | Prediction type | Simple |
| Estimated Inversion Size | 43,391 bp | Supporting predictions | 2 |
| Inverted allele frequency | ND | Mechanism of origin | ND |
| Functional effect | Intergenic breakpoints | Breakpoint 1 | chrX:52519881-52535689 |
| Ancestral orientation | NA | Breakpoint 2 | chrX:52557096-52585253 |
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Human Polymorphic Inversion DataBase
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General information
- Region map
+ Predictions
- Martinez-Fundichely et al. 2014 (in preparation)
| Description | Accurate prediction of inversions in the human genome from Kidd et al. 2008 fosmid paired-end mapping data using the GRIAL algorithm, and validation of some predictions by sequence analysis and PCR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Name | |||||||||||||||||||||||
| Breakpoint 1 | chrX:52519881-52552594 | Breakpoint 2 | chrX:52557096-52597300 | ||||||||||||||||||||
| D/C Score | NA | Disc. Support Prob. | 0.45952 | ||||||||||||||||||||
| Support | 2 probes  | ||||||||||||||||||||||
| Individuals |
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| Name | |||||||||||||||||||||||
| Breakpoint 1 | chrX:52498272-52535689 | Breakpoint 2 | chrX:52547496-52585253 | ||||||||||||||||||||
| D/C Score | NA | Disc. Support Prob. | 0.22606 | ||||||||||||||||||||
| Support | 7 probes | ||||||||||||||||||||||
| Individuals |
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+ Validation and genotyping
No validations are found
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chrX:52519881-52535689 | Breakpoint 2 | chrX:52557096-52585253 | |||||||||||||
| Definition method | Default informatic definition | |||||||||||||||
| Mechanism of origin |
ND
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| Flexibility | 10.76 | GC content | 0.4 | Stability | 1.85 |
| Position SD1 | Size (bp) | Position SD2 | Size (bp) | Identity | Relative orientation |
| chrX:52504077-52534883 | 30,807 | chrX:52556526-52586788 | 30,263 | 0.997 | Inverted |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
No genes disrupted by the inversion breakpoints
+ Inversion phenotypical effects
Not defined
+ Report history
- 2015-02-23 10:14:41
| Breakpoint 1 | chrX:52519881-52535689 | Breakpoint 2 | chrX:52557096-52585253 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
