| Accession | HsInv0404 | Region of the inversion | chrX:139901580-140512523 |
| Status | Unreliable prediction | Prediction type | Simple |
| Estimated Inversion Size | 567,453 bp | Supporting predictions | 1 |
| Inverted allele frequency | ND | Mechanism of origin | ND |
| Functional effect | Breaks one gene | Breakpoint 1 | chrX:139901580-139949535 |
| Ancestral orientation | NA | Breakpoint 2 | chrX:140473496-140512523 |
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Human Polymorphic Inversion DataBase
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General information
- Region map
+ Predictions
- Martinez-Fundichely et al. 2014 (in preparation)
| Description | Accurate prediction of inversions in the human genome from Kidd et al. 2008 fosmid paired-end mapping data using the GRIAL algorithm, and validation of some predictions by sequence analysis and PCR | ||||||||||||||||||||||||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||||||||||||||||||||||||
| Name | |||||||||||||||||||||||
| Breakpoint 1 | chrX:139901580-139949535 | Breakpoint 2 | chrX:140473496-140512523 | ||||||||||||||||||||
| D/C Score | 0 | Disc. Support Prob. | 0.00073 | ||||||||||||||||||||
| Support | 3 probes  | ||||||||||||||||||||||
| Individuals |
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| Comments | Below the threshold of the Discordant Support (DS) probability | ||||||||||||||||||||||
+ Validation and genotyping
No validations are found
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chrX:139901580-139949535 | Breakpoint 2 | chrX:140473496-140512523 | |||||||||||||||||||||||||||||||
| Definition method | Default informatic definition | |||||||||||||||||||||||||||||||||
| Mechanism of origin |
ND
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| Flexibility | 10.9 | GC content | 0.43 | Stability | 1.86 |
| Position SD1 | Size (bp) | Position SD2 | Size (bp) | Identity | Relative orientation |
| chrX:139908067-139922432 | 14,366 | chrX:140501099-140515425 | 14,327 | 0.986 | Direct |
| chrX:139911946-139922432 | 10,487 | chrX:140490584-140501044 | 10,461 | 0.989 | Inverted |
| chrX:139922432-139936621 | 14,190 | chrX:140503462-140517670 | 14,209 | 0.987 | Direct |
| chrX:139923951-140036444 | 112,494 | chrX:140388477-140501044 | 112,568 | 0.997 | Inverted |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
| Gene position | chrX:140418508-140565735 |
| Mechanism | Breaks one gene |
+ Inversion phenotypical effects
Not defined
+ Report history
- 2015-02-23 10:14:45
| Breakpoint 1 | chrX:139901580-139949535 | Breakpoint 2 | chrX:140473496-140512523 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
