| Accession | HsInv0542 | Region of the inversion | chr15:18887027-20104102 |
| Status | Predicted | Prediction type | Simple |
| Estimated Inversion Size | 1,201,325 bp | Supporting predictions | 2 |
| Inverted allele frequency | ND | Mechanism of origin | ND |
| Functional effect | Breaks one gene | Breakpoint 1 | chr15:18887027-18904314 |
| Ancestral orientation | NA | Breakpoint 2 | chr15:20089888-20104102 |
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Human Polymorphic Inversion DataBase
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General information
- Region map
+ Predictions
| Description | Paired-end mapping analysis of the J. Craig Venter genome (HuRef) | ||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||
| Name | |||||||
| Breakpoint 1 | chr15:18888223-18896987 | Breakpoint 2 | chr15:20091345-20099321 | ||||
| Individuals |
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- Martinez-Fundichely et al. 2014 (in preparation)
| Description | Accurate prediction of inversions in the human genome from Kidd et al. 2008 fosmid paired-end mapping data using the GRIAL algorithm, and validation of some predictions by sequence analysis and PCR | ||||||||||||||||||||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||||||||||||||||||||
| Name | |||||||||||||||||||||||
| Breakpoint 1 | chr15:18887027-18904314 | Breakpoint 2 | chr15:20089888-20104102 | ||||||||||||||||||||
| D/C Score | -0.13 | Disc. Support Prob. | 0.25657 | ||||||||||||||||||||
| Support | 74 probes  | ||||||||||||||||||||||
| Individuals |
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+ Validation and genotyping
No validations are found
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chr15:18887027-18904314 | Breakpoint 2 | chr15:20089888-20104102 | |||||||||||||
| Definition method | Default informatic definition | |||||||||||||||
| Mechanism of origin |
ND
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| Flexibility | 10.31 | GC content | 0.48 | Stability | 2.01 |
| Position SD1 | Size (bp) | Position SD2 | Size (bp) | Identity | Relative orientation |
| chr15:18887892-18894179 | 6,288 | chr15:20091262-20097557 | 6,296 | 0.997 | Inverted |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
- HERC2P3
| Gene position | chr15:18873663-18971447 |
| Mechanism | Breaks one gene |
+ Inversion phenotypical effects
Not defined
+ Report history
- 2015-02-23 10:14:49
| Breakpoint 1 | chr15:18887027-18903069 | Breakpoint 2 | chr15:20089888-20104102 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
- 2015-02-23 10:14:49
| Breakpoint 1 | chr15:18887027-18904314 | Breakpoint 2 | chr15:20089888-20104102 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
- 2015-02-23 10:14:49
| Breakpoint 1 | chr15:18887027-18904314 | Breakpoint 2 | chr15:20089888-20104102 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
