| Accession | HsInv0547 | Region of the inversion | chr15:80793519-82722506 |
| Status | Unreliable prediction | Prediction type | Simple |
| Estimated Inversion Size | 1,884,177 bp | Supporting predictions | 1 |
| Inverted allele frequency | ND | Mechanism of origin | ND |
| Functional effect | Intergenic breakpoints | Breakpoint 1 | chr15:80793519-80840198 |
| Ancestral orientation | NA | Breakpoint 2 | chr15:82679564-82722506 |
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Human Polymorphic Inversion DataBase
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General information
- Region map
+ Predictions
- Martinez-Fundichely et al. 2014 (in preparation)
| Description | Accurate prediction of inversions in the human genome from Kidd et al. 2008 fosmid paired-end mapping data using the GRIAL algorithm, and validation of some predictions by sequence analysis and PCR | ||||||||||||||||||||||||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||||||||||||||||||||||||
| Name | |||||||||||||||||||||||
| Breakpoint 1 | chr15:80793519-80840198 | Breakpoint 2 | chr15:82679564-82722506 | ||||||||||||||||||||
| D/C Score | -0.59 | Disc. Support Prob. | 0 | ||||||||||||||||||||
| Support | 3 probes  | ||||||||||||||||||||||
| Individuals |
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| Comments | Below the threshold of the Discordant Support (DS) probability | ||||||||||||||||||||||
+ Validation and genotyping
No validations are found
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chr15:80793519-80840198 | Breakpoint 2 | chr15:82679564-82722506 | |||||||||||||||||||||||||
| Definition method | Default informatic definition | |||||||||||||||||||||||||||
| Mechanism of origin |
ND
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| Flexibility | 10.37 | GC content | 0.43 | Stability | 1.88 |
| Position SD1 | Size (bp) | Position SD2 | Size (bp) | Identity | Relative orientation |
| chr15:80723891-80806729 | 82,839 | chr15:82625164-82707944 | 82,781 | 0.990 | Inverted |
| chr15:80789577-80826261 | 36,685 | chr15:82684497-82716305 | 31,809 | 0.971 | Inverted |
| chr15:80837209-80855157 | 17,949 | chr15:82665408-82684484 | 19,077 | 0.961 | Inverted |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
No genes disrupted by the inversion breakpoints
+ Inversion phenotypical effects
Not defined
+ Report history
- 2015-02-23 10:14:50
| Breakpoint 1 | chr15:80793519-80840198 | Breakpoint 2 | chr15:82679564-82722506 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
