| Accession | HsInv0987 | Region of the inversion | chr2:131602576-131604239 |
| Status | False | Prediction type | Simple |
| Estimated Inversion Size | 657 bp | Supporting predictions | 2 |
| Inverted allele frequency | NA | Mechanism of origin | NA |
| Functional effect | Inverts a region within an intron of a gene | Breakpoint 1 | chr2:131602576-131603645 |
| Ancestral orientation | NA | Breakpoint 2 | chr2:131603294-131604239 |
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Human Polymorphic Inversion DataBase
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General information
- Region map
+ Predictions
| Description | Integrated analysis of structural variants in 2,504 human genomes through short-read and long-read DNA sequencing and statistical imputation using the 1000 Genomes Project data | ||||||||||
| Method | Paired-end mapping (PEM), Long-read sequencing | ||||||||||
| Name | |||
| Breakpoint 1 | chr2:131603036-131603036 | Breakpoint 2 | chr2:131603781-131603781 |
| Individuals | 1232 out of 2504 individuals
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| Description | Next generation sequencing and analysis by paired-end mapping of a Korean individual genome | ||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||
| Name | |||||||
| Breakpoint 1 | chr2:131603045-131603176 | Breakpoint 2 | chr2:131603639-131603894 | ||||
| Individuals |
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+ Validation and genotyping
| Description | Integrated analysis of structural variants in 2,504 human genomes through short-read and long-read DNA sequencing and statistical imputation using the 1000 Genomes Project data | ||||
| Method | Sequence analysis |
| Status | False |
| Comment | Inverted duplication validated by sequence analysis of Sanger sequencing reads from PCR amplicons |
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chr2:131602576-131603645 | Breakpoint 2 | chr2:131603294-131604239 | ||
| Definition method | Default informatic definition | ||||
| Mechanism of origin |
NA
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| Flexibility | 9.84 | GC content | 0.59 | Stability | 2.13 |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
- PLEKHB2
| Gene position | chr2:131578889-131623895 |
| Mechanism | Inverts a region within an intron of a gene |
+ Inversion phenotypical effects
Not defined
+ Report history
- 2017-09-18 00:00:00
| Breakpoint 1 | chr2:131602576-131603645 | Breakpoint 2 | chr2:131603294-131604239 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
- 2015-02-23 10:15:06
| Breakpoint 1 | chr2:131602576-131603645 | Breakpoint 2 | chr2:131603294-131604239 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
