| Accession | HsInv0184 | Region of the inversion | chr17:38734460-38757180 |
| Status | Predicted | Prediction type | Simple |
| Estimated Inversion Size | 21,687 bp | Supporting predictions | 3 |
| Inverted allele frequency | ND | Mechanism of origin | ND |
| Functional effect | Breaks one gene | Breakpoint 1 | chr17:38734460-38735428 |
| Ancestral orientation | NA | Breakpoint 2 | chr17:38756080-38757180 |
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Human Polymorphic Inversion DataBase
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General information
- Region map
+ Predictions
| Description | Next generation sequencing and analysis by paired-end mapping of an individual genome of African origin | ||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||
| Name | |||||||
| Breakpoint 1 | chr17:38736719-38737132 | Breakpoint 2 | chr17:38756574-38756589 | ||||
| Individuals |
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| Description | Next generation sequencing and analysis by paired-end mapping of a Korean individual genome | ||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||
| Name | |||||||
| Breakpoint 1 | chr17:38734828-38735060 | Breakpoint 2 | chr17:38756580-38756680 | ||||
| Individuals |
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- Martinez-Fundichely et al. 2014 (in preparation)
| Description | Accurate prediction of inversions in the human genome from Kidd et al. 2008 fosmid paired-end mapping data using the GRIAL algorithm, and validation of some predictions by sequence analysis and PCR | ||||||||||||||||||||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||||||||||||||||||||
| Name | |||||||||||||||||||||||
| Breakpoint 1 | chr17:38718480-38744730 | Breakpoint 2 | chr17:38750494-38784719 | ||||||||||||||||||||
| D/C Score | NA | Disc. Support Prob. | 0.36715 | ||||||||||||||||||||
| Support | 13 probes  | ||||||||||||||||||||||
| Individuals |
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+ Validation and genotyping
No validations are found
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chr17:38734460-38735428 | Breakpoint 2 | chr17:38756080-38757180 | ||
| Definition method | Default informatic definition | ||||
| Mechanism of origin |
ND
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| Flexibility | 9.9 | GC content | 0.56 | Stability | 2.11 |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
| Gene position | chr17:38728962-38736588 |
| Mechanism | Breaks one gene |
+ Inversion phenotypical effects
Not defined
+ Report history
- 2015-02-23 10:14:29
| Breakpoint 1 | chr17:38734460-38735428 | Breakpoint 2 | chr17:38756080-38757180 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
