Results from PredictProtein for predict_h31733

TOC for file /home/phd/server/work/predict_h31733

The following information has been received by the server (TOC)
PROSITE motif search (A Bairoch; P Bucher and K Hofmann) (TOC)
SEG low-complexity regions (J C Wootton & S Federhen) (TOC)
ProDom domain search (E Sonnhammer; Corpet, Gouzy, D Kahn) (TOC)
MAXHOM alignment header (TOC)
MAXHOM alignment (TOC)
PHD information about accuracy (TOC)
PHD predictions (TOC)
GLOBE prediction of globularity (TOC)
PHD in COLUMN format (TOC)
PHD in RDB format (TOC)
Ambivalent Sequence Predictor(Malin Young, Kent Kirshenbaum, Stefan Highsmith) (TOC)

END of TOC

BEG of results for file /home/phd/server/work/predict_h31733

The following information has been received by the server

reference predict_h31733 (May 10, 2002 03:58:05)
reference pred_h31733 (May 10, 2002 03:57:51)
PPhdr from: ncenteno@imim.es
PPhdr resp: MAIL
PPhdr orig: HTML
PPhdr want: HTML
PPhdr password(###)
prediction of: - default prediction of: - PHDsec PHDacc PHDhtm ProSite SEG ProDom
return msf format
db=pdb
ret column format
ret phd msf
ret phd casp
ret phd rdb
ret html
ret html detail
ret html perline=60
ret html detail perline=60
# default: single protein sequence description=acetate kinase >sp|P58382|ACK1_RHIME Acetate kinase (EC 2.7.2.1) (Acetokinase) - Rhizobium meliloti (Sinorhizobium meliloti).
MEALLVINAGSSSLKFQIFGIATAGLERQVRAKLDGIATQPRLKATAADGTELINRRLDA
TAVPDLPEALSVARDWLATLRGFDLRAIGHRVVHGGPDYVRPVLIETTVLDRLASYQDLA
PLHQPNNLAPIRLAMDIKPDVPQVACFDTAFHRGRTEHTDCYALPRTFYEQGVRRYGFHG
ISYEYIAGRLREVAPEVARGRVIVAHLGSGASMCALKDGRSVETTMGFTALDGLPMGTRP
GQLDPGVVLHLLTDQGMSAQAVSDLLYHRSGLKGLSGISNDMRELLGSDDPRASFAIDHF
VHRCALDAGMLAAALGGLDAFVFTAGIGENSAPIRARVSEGLAWLGAELDPAANDAGASV
ISKAGSRVALHVMPTDEELMIARHTLAIIRAR

PROSITE motif search (A Bairoch; P Bucher and K Hofmann)

TOP - BOTTOM - ProSite

-------------------------------------------------------------
Pattern-ID: PKC_PHOSPHO_SITE PS00005 PDOC00005
Pattern-DE: Protein kinase C phosphorylation site
Pattern:    [ST].[RK]
   13       SLK
   79       TLR

Pattern-ID: CK2_PHOSPHO_SITE PS00006 PDOC00006
Pattern-DE: Casein kinase II phosphorylation site
Pattern:    [ST].{2}[DE]
   46       TAAD
   108      TVLD
   115      SYQD
   167      TFYE
   229      TALD
   375      TDEE

Pattern-ID: MYRISTYL PS00008 PDOC00008
Pattern-DE: N-myristoylation site
Pattern:    G[^EDRKHPFYW].{2}[STAGCN][^P]
   20       GIATAG
   208      GSGASM
   233      GLPMGT
   309      GMLAAA
   316      GGLDAF
   326      GIGENS
   365      GSRVAL

Pattern-ID: ACETATE_KINASE_1 PS01075 PDOC00826
Pattern-DE: Acetate and butyrate kinases family signature 1
Pattern:    [LIVM]{2}.[LIVM]N.GS[ST]S.[KE]
   4        LLVINAGSSSLK

Pattern-ID: ACETATE_KINASE_2 PS01076 PDOC00826
Pattern-DE: Acetate and butyrate kinases family signature 2
Pattern:    [LIVMA]{2}.{2}H.G.G.[ST][LIVM].[AV].{3}G
   202      VIVAHLGSGASMCALKDG

SEG low-complexity regions (J C Wootton & S Federhen)

TOP - BOTTOM - SEG

prot (#) ppOld, default: single protein sequence description=acetate kinase sp|p58382|ack1_rhime acetate kinase (ec 2.7.2.1) (acetokinase) - rhizobium meliloti (sinorhizobium meliloti). /home/phd/server/work/predict_h31733 from: 1 to: 392 prot (#) ppOld, default: single protein sequence description=acetate kinase sp|p58382|ack1_rhime acetate kinase (ec 2.7.2.1) (acetokinase) - rhizobium meliloti (sinorhizobium meliloti). /home/phd/server/work/predict_h31733 /home/phd/server/work/predict_h31733.segNormGcg Length: 392 11-Jul-99 Check: 2818 .. 1 MEALLVINAG SSSLKFQIFG IATAGLERQV RAKLDGIATQ PRLKATAADG 51 TELINRRLDA TAVPDLPEAL SVARDWLATL RGFDLRAIGH RVVHGGPDYV 101 RPVLIETTVL DRLASYQDLA PLHQPNNLAP IRLAMDIKPD VPQVACFDTA 151 FHRGRTEHTD CYALPRTFYE QGVRRYGFHG ISYEYIAGRL REVAPEVARG 201 RVIVAHLGSG ASMCALKDGR SVETTMGFTA LDGLPMGTRP GQLDPGVVLH 251 LLTDQGMSAQ AVSDLLYHRS GLKGLSGISN DMRELLGSDD PRASFAIDHF 301 VHRCxxxxxx xxxxxxxxxx FVFTAGIGEN SAPIRARVSE GLAWLGAELD 351 PAANDAGASV ISKAGSRVAL HVMPTDEELM IARHTLAIIR AR

ProDom domain search (E Sonnhammer; Corpet, Gouzy, D Kahn)

TOP - BOTTOM - ProDom - MView

--- ------------------------------------------------------------
--- 
--- Again: these results were obtained based on the domain data-
--- base collected by Daniel Kahn and his coworkers in Toulouse.
--- 
--- PLEASE quote: 
---       F Corpet, J Gouzy, D Kahn (1998).  The ProDom database
---       of protein domain families. Nucleic Ac Res 26:323-326.
--- 
--- The general WWW page is on:
----      ---------------------------------------
---       http://www.toulouse.inra.fr/prodom.html
----      ---------------------------------------
--- 
--- For WWW graphic interfaces to PRODOM, in particular for your
--- protein family, follow the following links (each line is ONE
--- single link for your protein!!):
--- 
http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD003226 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD003226
http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD003226 ==> graphical output of all proteins having domain PD003226
--- 
--- NOTE: if you want to use the link, make sure the entire line
---       is pasted as URL into your browser!
--- 
--- END of PRODOM
--- ------------------------------------------------------------

MAXHOM alignment header

--- ------------------------------------------------------------
--- MAXHOM multiple sequence alignment
--- ------------------------------------------------------------
--- 
--- MAXHOM ALIGNMENT HEADER: ABBREVIATIONS FOR SUMMARY
--- ID           : identifier of aligned (homologous) protein
--- STRID        : PDB identifier (only for known structures)
--- IDE          : percentage of pairwise sequence identity
--- WSIM         : percentage of weighted similarity
--- LALI         : number of residues aligned
--- NGAP         : number of insertions and deletions (indels)
--- LGAP         : number of residues in all indels
--- LSEQ2        : length of aligned sequence
--- ACCNUM       : SwissProt accession number
--- OMIM         : OMIM (Online Mendelian Inheritance in Man) ID
--- NAME         : one-line description of aligned protein
--- 
--- MAXHOM ALIGNMENT HEADER: SUMMARY
ID         STRID  IDE WSIM LALI NGAP LGAP LSEQ2 ACCNUM NAME                     
1g99_A             39   59  385    6   10   398 pdb|pdb|1g g TRANSFERASE            
--- 
--- MAXHOM ALIGNMENT: IN MSF FORMAT

--- 
--- Version of database searched for alignment:
--- PDB release: constantly updated
---

MAXHOM alignment

TOP - BOTTOM - MaxHom - MView

Identities computed with respect to: (1) predict_h3170
Colored by: consensus/70% and property

                   1 [        .         .         .         .         :         . 60 
1 predict_h3170      MEALLVINAGSSSLKFQIFGIATAGLERQVRAKLDGIATQPRLKATAADGTELINRRLDA    
2 1g99_A             ---VLVINAGSSSLKYQLIDMTNESALAVGLCERIGIDNstQKKFDGKKLEKLTDLPTHK    
  consensus/100%     ...lLVINAGSSSLKaQlhshsstuh.t.shsch.GIsspsphKhsutchpcLhsh.hct    
  consensus/90%      ...lLVINAGSSSLKaQlhshsstuh.t.shsch.GIsspsphKhsutchpcLhsh.hct    
  consensus/80%      ...lLVINAGSSSLKaQlhshsstuh.t.shsch.GIsspsphKhsutchpcLhsh.hct    
  consensus/70%      ...lLVINAGSSSLKaQlhshsstuh.t.shsch.GIsspsphKhsutchpcLhsh.hct    

                  61          .         .         .         1         .         . 120
1 predict_h3170      TAVPDLPEALSVARDWLATLRGFDLRAIGHRVVHGGPDYVRPVLIETTVLDRLASYQDLA    
2 1g99_A             DALEEVVKALTDDEFGVIKDMG-EINAVGHRVVHGGEKFTTSALYDEGVEKAIKDCFELA    
  consensus/100%     sAl.-lscALossc.hlhp.hG.-lpAlGHRVVHGG.caspssLh-psV.ctltsh.-LA    
  consensus/90%      sAl.-lscALossc.hlhp.hG.-lpAlGHRVVHGG.caspssLh-psV.ctltsh.-LA    
  consensus/80%      sAl.-lscALossc.hlhp.hG.-lpAlGHRVVHGG.caspssLh-psV.ctltsh.-LA    
  consensus/70%      sAl.-lscALossc.hlhp.hG.-lpAlGHRVVHGG.caspssLh-psV.ctltsh.-LA    

                 121          .         .         :         .         .         . 180
1 predict_h3170      PLHQPNNLAPIRLAMDIKPDVPQVACFDTAFHRGRTEHTDCYALPRTFYEQGVRRYGFHG    
2 1g99_A             PLHNPPNMMGISACAEIMPGTPMVIVFDTAFHQTMPPYAYMYALPYDLYehGVRKYGFHG    
  consensus/100%     PLHpPsNhhsIphsh-IhPssP.VhsFDTAFHpshs.as.hYALPhshYEpGVR+YGFHG    
  consensus/90%      PLHpPsNhhsIphsh-IhPssP.VhsFDTAFHpshs.as.hYALPhshYEpGVR+YGFHG    
  consensus/80%      PLHpPsNhhsIphsh-IhPssP.VhsFDTAFHpshs.as.hYALPhshYEpGVR+YGFHG    
  consensus/70%      PLHpPsNhhsIphsh-IhPssP.VhsFDTAFHpshs.as.hYALPhshYEpGVR+YGFHG    

                 181          .         2         .         .         .         . 240
1 predict_h3170      ISYEYIAGRLREVAPEVARGRVIVAHLGSGASMCALKDGRSVETTMGFTALDGLPMGTRP    
2 1g99_A             TSHKYVAERAALMLGKPAEekIITCHLGNGSSITAVEGGKSVETSMGFTPLEGLAMGTRC    
  consensus/100%     hSacYlAtRht.hhscsAct+lIssHLGsGuShsAlcsG+SVEToMGFTsL-GLsMGTRs    
  consensus/90%      hSacYlAtRht.hhscsAct+lIssHLGsGuShsAlcsG+SVEToMGFTsL-GLsMGTRs    
  consensus/80%      hSacYlAtRht.hhscsAct+lIssHLGsGuShsAlcsG+SVEToMGFTsL-GLsMGTRs    
  consensus/70%      hSacYlAtRht.hhscsAct+lIssHLGsGuShsAlcsG+SVEToMGFTsL-GLsMGTRs    

                 241          :         .         .         .         .         3 300
1 predict_h3170      GQLDPGVVLHLLTDQGMSAQAVSDLLYHRSGLKGLSGISNDMRELLGSDDPRASFAIDHF    
2 1g99_A             GSIDPAIVPFLMEKEGLTTREIDTLMNKKSGVLGVSGLSNDFRDlaSKGNRKAELALEIF    
  consensus/100%     GplDPulV.aLhpcpGhosptlssLh.++SGlhGlSGlSNDhR-Lhupss.+AphAl-hF    
  consensus/90%      GplDPulV.aLhpcpGhosptlssLh.++SGlhGlSGlSNDhR-Lhupss.+AphAl-hF    
  consensus/80%      GplDPulV.aLhpcpGhosptlssLh.++SGlhGlSGlSNDhR-Lhupss.+AphAl-hF    
  consensus/70%      GplDPulV.aLhpcpGhosptlssLh.++SGlhGlSGlSNDhR-Lhupss.+AphAl-hF    

                 301          .         .         .         .         :         . 360
1 predict_h3170      VHRCALDAGMLAAALGGLDAFVFTAGIGENSAPIRARVSEGLAWLGAELDPAANDAGASV    
2 1g99_A             AYKVKKFIGEYSAVLNGADAVVFTAGIGENSASIRKRILTGLDGIGIKIDDEKNKIRGQe    
  consensus/100%     sa+sth.hG.huAsLsGhDAhVFTAGIGENSAsIRtRl.pGLshlGhclDsttNchtup.    
  consensus/90%      sa+sth.hG.huAsLsGhDAhVFTAGIGENSAsIRtRl.pGLshlGhclDsttNchtup.    
  consensus/80%      sa+sth.hG.huAsLsGhDAhVFTAGIGENSAsIRtRl.pGLshlGhclDsttNchtup.    
  consensus/70%      sa+sth.hG.huAsLsGhDAhVFTAGIGENSAsIRtRl.pGLshlGhclDsttNchtup.    

                 361          .         .         . ] 392
1 predict_h3170      ISKAGSRVALHVMPTDEELMIARHTLAIIRAR    
2 1g99_A             iSTPDAKVRVFVIPTNEELAIARETKEIV---    
  consensus/100%     ISpssu+VtlaVhPTsEELhIARcThtIl...    
  consensus/90%      ISpssu+VtlaVhPTsEELhIARcThtIl...    
  consensus/80%      ISpssu+VtlaVhPTsEELhIARcThtIl...    
  consensus/70%      ISpssu+VtlaVhPTsEELhIARcThtIl...

PHD information about accuracy

****************************************************************************
*                                                                          *
*    PHD: Profile fed neural network systems from HeiDelberg               *
*    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~               *
*                                                                          *
*    Prediction of:			                                   *
* 	secondary structure,   			   by PHDsec		   *
* 	solvent accessibility, 			   by PHDacc		   *
* 	and helical transmembrane regions, 	   by PHDhtm		   *
*                                                                          *
*    Author:             						   *
*	Burkhard Rost							   *
*       EMBL, 69012 Heidelberg, Germany					   *
*       Internet: Rost@EMBL-Heidelberg.DE				   *
*                                                                          *
*    All rights reserved.                                                  *
*                                                                          *
****************************************************************************
*                                                                          *
*    The network systems are described in:   	                     	   *
*                                                                          *
*    PHDsec:    B Rost & C Sander: JMB, 1993, 232, 584-599.		   *
*    		B Rost & C Sander: Proteins, 1994, 19, 55-72.		   *
*    PHDacc:  	B Rost & C Sander: Proteins, 1994, 20, 216-226.		   *
*    PHDhtm:  	B Rost et al.: 	   Prot. Science, 1995, 4, 521-533.	   *
*                                                                          *
****************************************************************************

PHD predictions

TOP - BOTTOM - PHD

PHD predictions for predict_h31733

Different levels of data:

PHD brief
PHD normal
PHD detail

PHDsec summary overall your protein can be classified as:
mixed given the following classes:
- 'all-alpha': %H > 45% AND %E < 5%
- 'all-beta': %H < 5% AND %E > 45%
- 'alpha-beta': %H > 30% AND %E > 20%
- 'mixed': all others

Predicted secondary structure composition for your protein:

%H: 45.1 %E: 14.0 %L: 40.8

Residue composition for your protein:

%A: 13.5 %C: 1.0 %D: 6.9 %E: 4.3 %F: 3.1

%G: 9.4 %H: 3.3 %I: 5.1 %K: 1.8 %L: 11.7

%M: 2.5 %N: 1.8 %P: 4.8 %Q: 2.5 %R: 8.4

%S: 5.4 %T: 5.1 %V: 6.6 %W: 0.5 %Y: 2.0

AA : amino acid sequence

PHD_sec: PHD predicted secondary structure: H=helix, E=extended (sheet), blank=other (loop)
PHD = PHD: Profile network prediction HeiDelberg

Rel_sec: reliability index for PHDsec prediction (0=low to 9=high)
Note: for the brief presentation strong predictions marked by '*'

SUB_sec: subset of the PHDsec prediction, for all residues with an expected average accuracy > 82% (tables in header)
NOTE: for this subset the following symbols are used:
L: is loop (for which above ' ' is used)
.: means that no prediction is made for this residue, as the reliability is: Rel < 5

pH_sec: 'probability' for assigning helix (1=high, 0=low)

pE_sec: 'probability' for assigning strand (1=high, 0=low)

pL_sec: 'probability' for assigning neither helix, nor strand (1=high, 0=low)

P_3_acc: PHD predicted relative solvent accessibility (acc) in 3 states: b = 0-9%, i = 9-36%, e = 36-100%.

Rel_acc: reliability index for PHDacc prediction (0=low to 9=high)
Note: for the brief presentation strong predictions marked by '*'

SUB_acc: subset of the PHDacc prediction, for all residues with an expected average correlation > 0.69 (tables in header)
NOTE: for this subset the following symbols are used:
I: is intermediate (for which above ' ' is used)
.: means that no prediction is made for this residue, as the reliability is: Rel < 4

PHD_acc: PHD predicted relative solvent accessibility (acc) in 10 states: a value of n (=0-9) corresponds to a relative acc. of between n*n % and (n+1)*(n+1) % (e.g. for n=5: 16-25%).

PHD results (brief)

....,....1....,....2....,....3....,....4....,....5....,....6 AA MEALLVINAGSSSLKFQIFGIATAGLERQVRAKLDGIATQPRLKATAADGTELINRRLDA PHD_sec EEEEEEE HHHHHHHHHHHHHHHHHHHHHHH HHHH H Rel_sec * ***** ** ******************* * **** **** ** **** * P_3_acc eebbbbbbbbbbbbebbbbebbeeebeeebebeeebbeeeeeeeeeeeeeeeb eeeeee Rel_acc ***** ** ** * ** * * ** ** ....,....7....,....8....,....9....,....10...,....11...,....12 AA TAVPDLPEALSVARDWLATLRGFDLRAIGHRVVHGGPDYVRPVLIETTVLDRLASYQDLA PHD_sec HHHHHHHHHHHHHHHHHHHH EEEEEEEEEE HHH HHHHHHHHHHHHH Rel_sec ********* ******** ** * ** ** ************ P_3_acc ebbeebbebbeeeeeebbeeebbeb bbbbbbbbbbeebbebbbbeebbeeebeebeebb Rel_acc ** * * *** * * *** *** * ** * * * * ** ....,....13...,....14...,....15...,....16...,....17...,....18 AA PLHQPNNLAPIRLAMDIKPDVPQVACFDTAFHRGRTEHTDCYALPRTFYEQGVRRYGFHG PHD_sec HHHHHHH EEEEEE HHHHHH EEE H Rel_sec **** * *** ***** **** **** **** *** ** P_3_acc bb e ebbbebebbbebeee bebbbbbbbbbee ee bebbbbbeebbeebb ebbb b Rel_acc * ** * ******** * * *** * ** *** * ....,....19...,....20...,....21...,....22...,....23...,....24 AA ISYEYIAGRLREVAPEVARGRVIVAHLGSGASMCALKDGRSVETTMGFTALDGLPMGTRP PHD_sec HHHHHHHHHHHHHHHH EEEEEE HHHHHH EEEEE Rel_sec ************* ** ****** ** *** *** **** *** ******* P_3_acc bb ebbbebbeebbeeebeeebbbbbbbebbbbbbbeebeebebbbbbbbbebbbbbb e Rel_acc * ** * * ****** * * * * * * * ** ....,....25...,....26...,....27...,....28...,....29...,....30 AA GQLDPGVVLHLLTDQGMSAQAVSDLLYHRSGLKGLSGISNDMRELLGSDDPRASFAIDHF PHD_sec HHHHHHHHHHH HHHHHHHHHH EE HHHHHH HHHHHHHHH Rel_sec **** ********* *** ******** *** * ***** **** * ******* P_3_acc beb bbbbbbbbeeebbeeeebeebbeeebbbebbbbbbbebeebeeeeeeebebbbebb Rel_acc ** ** * * * * ** * * * * * *** * ....,....31...,....32...,....33...,....34...,....35...,....36 AA VHRCALDAGMLAAALGGLDAFVFTAGIGENSAPIRARVSEGLAWLGAELDPAANDAGASV PHD_sec HHHHHHHH EEE EEEEE HHHHHHHHHHHHHHHHHH E Rel_sec ******* *** ***** ** ***************** * ***** P_3_acc beebeeebbebbbbbebbbbbbbbbbbbebbbeb e bbebbeebbbeb eeeeeeebee Rel_acc * ** * ****** * * * * *** ** * ** * * ....,....37...,....38...,....39...,....40 AA ISKAGSRVALHVMPTDEELMIARHTLAIIRAR PHD_sec E EEEEEE HHHHHHHHHHHHHHH Rel_sec *** ***** ****************** * P_3_acc bbeeeeebbbbbbbbeebbbbbeebeebbebe Rel_acc * * * * * ** * **

PHD results (normal)

....,....1....,....2....,....3....,....4....,....5....,....6 AA MEALLVINAGSSSLKFQIFGIATAGLERQVRAKLDGIATQPRLKATAADGTELINRRLDA PHD_sec EEEEEEE HHHHHHHHHHHHHHHHHHHHHHH HHHH H Rel_sec 938999918945788999988899999987112147489951124667543651788715 SUB_sec L.EEEEE.LL.HHHHHHHHHHHHHHHHHHH.....L.LLLL....LLLL..HH.LLLL.H P_3_acc eebbbbbbbbbbbbebbbbebbeeebeeebebeeebbeeeeeeeeeeeeeeeb eeeeee Rel_acc 126799927412460738413111001120242013232233120405603540312113 SUB_acc ..bbbbb.bb..bb.b.bb............b.............e.ee..eb....... ....,....7....,....8....,....9....,....10...,....11...,....12 AA TAVPDLPEALSVARDWLATLRGFDLRAIGHRVVHGGPDYVRPVLIETTVLDRLASYQDLA PHD_sec HHHHHHHHHHHHHHHHHHHH EEEEEEEEEE HHH HHHHHHHHHHHHH Rel_sec 459999999947999886524854532344762499111233221158999999896643 SUB_sec .HHHHHHHHH.HHHHHHHH..LL.E.....EE..LL..........HHHHHHHHHHHH.. P_3_acc ebbeebbebbeeeeeebbeeebbeb bbbbbbbbbbeebbebbbbeebbeeebeebeebb Rel_acc 452535066423122141201211618553496042450110050220525024310167 SUB_acc eb.e.b.ebb......b.......b.bbb.bbb.b.ee.....b....b.e..e....bb ....,....13...,....14...,....15...,....16...,....17...,....18 AA PLHQPNNLAPIRLAMDIKPDVPQVACFDTAFHRGRTEHTDCYALPRTFYEQGVRRYGFHG PHD_sec HHHHHHH EEEEEE HHHHHH EEE H Rel_sec 468954633555341037999647797430227999423335575156531121322563 SUB_sec .LLLL.L..HHH.....LLLLL.EEEE.....LLLL.....LLLL.HHH........LL. P_3_acc bb e ebbbebebbbebeee bebbbbbbbbbee ee bebbbbbeebbeebb ebbb b Rel_acc 100003021071443251130109568448412102512141844126101580155504 SUB_acc ..........b.bb..b......bbbbbbbb.....e...b.bbb..b...bb..bbb.b ....,....19...,....20...,....21...,....22...,....23...,....24 AA ISYEYIAGRLREVAPEVARGRVIVAHLGSGASMCALKDGRSVETTMGFTALDGLPMGTRP PHD_sec HHHHHHHHHHHHHHHH EEEEEE HHHHHH EEEEE Rel_sec 289999999999983226527999964982246751489927987255521346799978 SUB_sec .HHHHHHHHHHHHH...LL.EEEEEE.LL...HHH..LLL.EEEE.LLL....LLLLLLL P_3_acc bb ebbbebbeebbeeebeeebbbbbbbebbbbbbbeebeebebbbbbbbbebbbbbb e Rel_acc 060328720313113522522797756121252292631206063314334154033110 SUB_acc .b...bb........e..e..bbbbbb....b..b.e....b.b...b..b.bb...... ....,....25...,....26...,....27...,....28...,....29...,....30 AA GQLDPGVVLHLLTDQGMSAQAVSDLLYHRSGLKGLSGISNDMRELLGSDDPRASFAIDHF PHD_sec HHHHHHHHHHH HHHHHHHHHH EE HHHHHH HHHHHHHHH Rel_sec 986548999998861885399999985439853412254458996368982548999999 SUB_sec LLLL.HHHHHHHHH.LLL.HHHHHHHH..LLL.....L..HHHHH.LLLL.H.HHHHHHH P_3_acc beb bbbbbbbbeeebbeeeebeebbeeebbbebbbbbbbebeebeeeeeeebebbbebb Rel_acc 120001792166252102020714342213112542242004024025312372497128 SUB_acc ......bb..bb.e.......b.e.b.......bb..b...b..b..e....b.bbb..b ....,....31...,....32...,....33...,....34...,....35...,....36 AA VHRCALDAGMLAAALGGLDAFVFTAGIGENSAPIRARVSEGLAWLGAELDPAANDAGASV PHD_sec HHHHHHHH EEE EEEEE HHHHHHHHHHHHHHHHHH E Rel_sec 999996622431312888268996456334189999999999998665482307789824 SUB_sec HHHHHHH........LLL.EEEEE.LL....HHHHHHHHHHHHHHHHH.L...LLLLL.. P_3_acc beebeeebbebbbbbebbbbbbbbbbbbebbbeb e bbebbeebbbeb eeeeeeebee Rel_acc 202511111125925220095998735112431702060554214524205420623251 SUB_acc ...b.......bb.b....bbbbbb.b...b..b...b.ebb..bb.e..ee..e...e. ....,....37...,....38...,....39...,....40 AA ISKAGSRVALHVMPTDEELMIARHTLAIIRAR PHD_sec E EEEEEE HHHHHHHHHHHHHHH Rel_sec 34688468897469989999999999999719 SUB_sec ..LLL.EEEEE.LLLHHHHHHHHHHHHHHH.L P_3_acc bbeeeeebbbbbbbbeebbbbbeebeebbebe Rel_acc 53310038081811001083761151256311 SUB_acc b......b.b.b......b.bb..b..bb...

PHD results (detail)

....,....1....,....2....,....3....,....4....,....5....,....6 AA MEALLVINAGSSSLKFQIFGIATAGLERQVRAKLDGIATQPRLKATAADGTELINRRLDA pH_sec . . ...... 1.0 pH_sec ................ 0.9 pH_sec ................... . . 0.8 pH_sec ................... . .. . 0.7 pH_sec .................... . .... . 0.6 pH_sec ....................... ... ..... .. 0.5 pH_sec ....................... ... ..... .. 0.4 pH_sec ......................... ..... ...... .. 0.3 pH_sec .......................... .............. ... 0.2 ------------------------------------------------------------ pE_sec .... 1.0 pE_sec ..... 0.9 pE_sec ..... 0.8 pE_sec ..... 0.7 pE_sec ....... 0.6 pE_sec ....... 0.5 pE_sec ....... 0.4 pE_sec ....... .. . 0.3 pE_sec ....... .... . .. . 0.2 ------------------------------------------------------------ pL_sec . . .. 1.0 pL_sec . .. . ... . ... 0.9 pL_sec . .. . .... ... .... 0.8 pL_sec . ... ....... .... .... 0.7 pL_sec . ... ........ ..... ..... 0.6 pL_sec . .... .. ......... ..... ...... 0.5 pL_sec .. .... .. .................. ...... 0.4 pL_sec .. ..... ..................... ........ 0.3 pL_sec ... ...... ... ................................ 0.2 ------------------------------------------------------------ P_3_acc eebbbbbbbbbbbbebbbbebbeeebeeebebeeebbeeeeeeeeeeeeeeeb eeeeee PHD_acc . . 100% PHD_acc . . . 81% PHD_acc .. . ... ... . . ............... . .... 64% PHD_acc .. . . ... ... . ... ............... ...... 49% PHD_acc .. . . ... ... . ... ............... ....... 36% PHD_acc .. . . ... ... . ... ............... ....... 25% PHD_acc .. . . ... ... . ... ............... ....... 16% PHD_acc .. . . ... ... . ... ............... ....... 9% PHD_acc .. . . ... ... . ... ............... ....... 4% ------------------------------------------------------------ ....,....7....,....8....,....9....,....10...,....11...,....12 AA TAVPDLPEALSVARDWLATLRGFDLRAIGHRVVHGGPDYVRPVLIETTVLDRLASYQDLA pH_sec ........ .. ...... . 1.0 pH_sec ........ ...... ......... 0.9 pH_sec ......... ....... ........... 0.8 pH_sec ................... . ............. 0.7 pH_sec .................... .. ............. 0.6 pH_sec .................... ... ... ............. 0.5 pH_sec ..................... ....... ............... 0.4 pH_sec ..................... ........................ 0.3 pH_sec ..................... ... ........................ 0.2 ------------------------------------------------------------ pE_sec 1.0 pE_sec . 0.9 pE_sec .. 0.8 pE_sec .. ..... 0.7 pE_sec .......... 0.6 pE_sec .......... 0.5 pE_sec ........... . 0.4 pE_sec ........... .. 0.3 pE_sec .. ............. . ..... 0.2 ------------------------------------------------------------ pL_sec .. 1.0 pL_sec . .. 0.9 pL_sec .. .. 0.8 pL_sec ... ... . 0.7 pL_sec ... .... . . 0.6 pL_sec ... ........ . . . 0.5 pL_sec . . .... ..... .............. .. 0.4 pL_sec .. . ........... ............... .... 0.3 pL_sec .. .. . .............................. . .... 0.2 ------------------------------------------------------------ P_3_acc ebbeebbebbeeeeeebbeeebbeb bbbbbbbbbbeebbebbbbeebbeeebeebeebb PHD_acc 100% PHD_acc 81% PHD_acc . .. . ..... . .. .. .. .. . 64% PHD_acc . .. . ...... ... . .. . .. ... .. .. 49% PHD_acc . .. . ...... ... . . .. . .. ... .. .. 36% PHD_acc . .. . ...... ... . . .. . .. ... .. .. 25% PHD_acc . .. . ...... ... . . .. . .. ... .. .. 16% PHD_acc . .. . ...... ... . . .. . .. ... .. .. 9% PHD_acc . .. . ...... ... . . .. . .. ... .. .. 4% ------------------------------------------------------------ ....,....13...,....14...,....15...,....16...,....17...,....18 AA PLHQPNNLAPIRLAMDIKPDVPQVACFDTAFHRGRTEHTDCYALPRTFYEQGVRRYGFHG pH_sec 1.0 pH_sec 0.9 pH_sec .. .. 0.8 pH_sec .... . ... . 0.7 pH_sec ...... . .... . . 0.6 pH_sec ...... .. ........ . 0.5 pH_sec . . ........ ... .... ......... . . 0.4 pH_sec . ............ .... .... ............... 0.3 pH_sec .. ............. ..... ..... .................. 0.2 ------------------------------------------------------------ pE_sec . 1.0 pE_sec .... 0.9 pE_sec ..... 0.8 pE_sec ...... 0.7 pE_sec ...... . 0.6 pE_sec ...... ... 0.5 pE_sec . . ...... ... 0.4 pE_sec ..... ........ ... .... 0.3 pE_sec ....... ........ ..... . ...... 0.2 ------------------------------------------------------------ pL_sec . ... ... 1.0 pL_sec .. .... ... 0.9 pL_sec .... . ..... .... .. . 0.8 pL_sec ........ ..... ..... .... .. 0.7 pL_sec ........ ...... . .............. .. 0.6 pL_sec ........ ...... .................. .. ... 0.5 pL_sec ......... ......... .................. .... .... 0.4 pL_sec ........... ......... .................... ...... ..... 0.3 pL_sec ......................... .................................. 0.2 ------------------------------------------------------------ P_3_acc bb e ebbbebebbbebeee bebbbbbbbbbee ee bebbbbbeebbeebb ebbb b PHD_acc . 100% PHD_acc . . 81% PHD_acc . . . .. .. .. . . 64% PHD_acc . . . . . ... . .. .. . .. .. . 49% PHD_acc . . . . . ... . ...... . .. .. .. . 36% PHD_acc ... . . . ... . ...... . .. .. .. . 25% PHD_acc .... . . . .... . ...... . .. .. .. . 16% PHD_acc .... . . . .... . ...... . .. .. .. . 9% PHD_acc .... . . . .... . ...... . .. .. .. . 4% ------------------------------------------------------------ ....,....19...,....20...,....21...,....22...,....23...,....24 AA ISYEYIAGRLREVAPEVARGRVIVAHLGSGASMCALKDGRSVETTMGFTALDGLPMGTRP pH_sec ........... 1.0 pH_sec ............. 0.9 pH_sec ............. ... 0.8 pH_sec .............. .... 0.7 pH_sec ................ ..... 0.6 pH_sec ................. ...... .. 0.5 pH_sec ................. ....... ... 0.4 pH_sec .................. ........ ..... 0.3 pH_sec .................. ......... ........ .. 0.2 ------------------------------------------------------------ pE_sec ... 1.0 pE_sec ..... .... 0.9 pE_sec ...... .... 0.8 pE_sec ...... .... 0.7 pE_sec ...... ..... 0.6 pE_sec ....... ...... 0.5 pE_sec ....... . ...... 0.4 pE_sec ......... .. ....... 0.3 pE_sec ......... ..... ......... 0.2 ------------------------------------------------------------ pL_sec . .. . . 1.0 pL_sec .. ... ...... 0.9 pL_sec . .. ... ....... 0.8 pL_sec .. ... .... ... ........ 0.7 pL_sec .... .... .... ..... ......... 0.6 pL_sec ..... .... ..... ............... 0.5 pL_sec . ...... ..... ..... ............... 0.4 pL_sec . ...... ...... ...... ............... 0.3 pL_sec .. ........ ........ ....... ................ 0.2 ------------------------------------------------------------ P_3_acc bb ebbbebbeebbeeebeeebbbbbbbebbbbbbbeebeebebbbbbbbbebbbbbb e PHD_acc 100% PHD_acc . 81% PHD_acc . . .. ... .. . .. . . 64% PHD_acc . . .. ... ... . .. .. . . . 49% PHD_acc .. . .. ... ... . .. .. . . . 36% PHD_acc .. . .. ... ... . .. .. . . .. 25% PHD_acc .. . .. ... ... . .. .. . . .. 16% PHD_acc .. . .. ... ... . .. .. . . .. 9% PHD_acc .. . .. ... ... . .. .. . . .. 4% ------------------------------------------------------------ ....,....25...,....26...,....27...,....28...,....29...,....30 AA GQLDPGVVLHLLTDQGMSAQAVSDLLYHRSGLKGLSGISNDMRELLGSDDPRASFAIDHF pH_sec .... ...... .. ...... 1.0 pH_sec ........ ....... ... ....... 0.9 pH_sec ......... ........ ..... . ....... 0.8 pH_sec .......... .......... ...... ......... 0.7 pH_sec ........... .......... ...... ......... 0.6 pH_sec ........... .......... ...... .......... 0.5 pH_sec ........... ........... ....... .......... 0.4 pH_sec ............ ............ ......... .......... 0.3 pH_sec ........................... .......... ........... 0.2 ------------------------------------------------------------ pE_sec 1.0 pE_sec 0.9 pE_sec 0.8 pE_sec . 0.7 pE_sec .. 0.6 pE_sec ..... 0.5 pE_sec ..... 0.4 pE_sec ....... 0.3 pE_sec ........ 0.2 ------------------------------------------------------------ pL_sec . . . 1.0 pL_sec .. .. .. ... 0.9 pL_sec .... .. .. .... 0.8 pL_sec .... ... .... . . .... 0.7 pL_sec .... ... .... ..... ..... 0.6 pL_sec .... .... .... ...... ..... 0.5 pL_sec ..... ..... ............ ...... 0.4 pL_sec ..... ...... ............... ......... 0.3 pL_sec ...... ........ ................ ......... 0.2 ------------------------------------------------------------ P_3_acc beb bbbbbbbbeeebbeeeebeebbeeebbbebbbbbbbebeebeeeeeeebebbbebb PHD_acc 100% PHD_acc . 81% PHD_acc . ... . . .. . ...... 64% PHD_acc . ... .... .. ... . . .. ....... . . 49% PHD_acc . ... .... .. ... . . .. ....... . . 36% PHD_acc . . ... .... .. ... . . .. ....... . . 25% PHD_acc . . ... .... .. ... . . .. ....... . . 16% PHD_acc . . ... .... .. ... . . .. ....... . . 9% PHD_acc . . ... .... .. ... . . .. ....... . . 4% ------------------------------------------------------------ ....,....31...,....32...,....33...,....34...,....35...,....36 AA VHRCALDAGMLAAALGGLDAFVFTAGIGENSAPIRARVSEGLAWLGAELDPAANDAGASV pH_sec .... ............ 1.0 pH_sec ..... .............. 0.9 pH_sec ....... ................ 0.8 pH_sec ....... ................. 0.7 pH_sec ........ .................. . 0.6 pH_sec ........ . .................. .. 0.5 pH_sec ......... . . ..................... ... 0.4 pH_sec ............... ...................... ... 0.3 pH_sec ................ ........................ ..... 0.2 ------------------------------------------------------------ pE_sec . 1.0 pE_sec ... 0.9 pE_sec ..... 0.8 pE_sec ..... . 0.7 pE_sec . . ..... . 0.6 pE_sec ... ...... .. 0.5 pE_sec ..... ...... .. 0.4 pE_sec ..... ....... .. 0.3 pE_sec ...... ......... .. ... 0.2 ------------------------------------------------------------ pL_sec . 1.0 pL_sec ... . ..... 0.9 pL_sec ... . . ..... 0.8 pL_sec ... .... . .. ..... 0.7 pL_sec .. .... ...... ... ...... 0.6 pL_sec ... ..... ....... ... ....... 0.5 pL_sec ... ..... ....... ........... 0.4 pL_sec ..... ....... ........ . ............ 0.3 pL_sec ............... ......... ................ 0.2 ------------------------------------------------------------ P_3_acc beebeeebbebbbbbebbbbbbbbbbbbebbbeb e bbebbeebbbeb eeeeeeebee PHD_acc . 100% PHD_acc . 81% PHD_acc ... . . . . .. . ....... .. 64% PHD_acc .. ... . . . . . . .. . ....... .. 49% PHD_acc .. ... . . . . ... . .. . ........ .. 36% PHD_acc .. ... . . . . ... . .. . ........ .. 25% PHD_acc .. ... . . . . ... . .. . ........ .. 16% PHD_acc .. ... . . . . ... . .. . ........ .. 9% PHD_acc .. ... . . . . ... . .. . ........ .. 4% ------------------------------------------------------------ ....,....37...,....38...,....39...,....40 AA ISKAGSRVALHVMPTDEELMIARHTLAIIRAR pH_sec ............. 1.0 pH_sec ............... 0.9 pH_sec ............... 0.8 pH_sec ............... 0.7 pH_sec ............... 0.6 pH_sec ................ 0.5 pH_sec ................ 0.4 pH_sec ................ 0.3 pH_sec ................ 0.2 -------------------------------- pE_sec . 1.0 pE_sec .... 0.9 pE_sec ..... 0.8 pE_sec . ...... 0.7 pE_sec . ...... 0.6 pE_sec . ...... 0.5 pE_sec .. ...... 0.4 pE_sec ... ....... 0.3 pE_sec ... ........ 0.2 -------------------------------- pL_sec .. . 1.0 pL_sec .. ... . 0.9 pL_sec ... ... . 0.8 pL_sec ..... ... . 0.7 pL_sec ..... ... .. 0.6 pL_sec ..... ... .. 0.5 pL_sec ...... .... .. 0.4 pL_sec ....... .... .. 0.3 pL_sec ........ ...... ... 0.2 -------------------------------- P_3_acc bbeeeeebbbbbbbbeebbbbbeebeebbebe PHD_acc . . 100% PHD_acc . . 81% PHD_acc ..... . . 64% PHD_acc ..... .. .. .. . . 49% PHD_acc ..... .. .. .. . . 36% PHD_acc ..... .. .. .. . . 25% PHD_acc ..... .. .. .. . . 16% PHD_acc ..... .. .. .. . . 9% PHD_acc ..... .. .. .. . . 4% --------------------------------

GLOBE prediction of globularity

--- 
--- GLOBE: prediction of protein globularity
--- 
--- nexp =   173    (number of predicted exposed residues)
--- nfit =   157    (number of expected exposed residues
--- diff =    16.00 (difference nexp-nfit)
--- =====> your protein appears as compact, as a globular domain
--- 
--- 
--- GLOBE: further explanations preliminaryily in:
---        http://www.columbia.edu/~rost/Papers/98globe.html
--- 
--- END of GLOBE

PHD in COLUMN format

--- 
--- PHD PREDICTION COLUMN FORMAT HEADER: ABBREVIATIONS
--- AA        : one-letter code for amino acid sequence
--- PSEC      : secondary structure prediction in 3 states:
---           : H=helix, E=extended (sheet), L=rest (loop)
--- RI_S      : reliability of secondary structure prediction
---           : scaled from 0 (low) to 9 (high)
--- pH        : 'probability' for assigning helix
--- pE        : 'probability' for assigning strand
--- pL        : 'probability' for assigning rest
---           : Note:   the 'probabilities' are scaled onto 0-9,
---           :         i.e., prH=5 means that the value of the
---           :         first output unit is 0.5-0.6
--- PACC      : predicted solvent accessibility in square Angstrom
--- PREL      : relative solvent accessibility in percent
--- RI_A      : reliability of accessibility prediction (0-9)
--- Pbie      : predicted relative accessibility in 3 states:
---           : b=0-9%, i=9-36%, e=36-100%
--- 
--- PHD PREDICTION COLUMN FORMAT 
  No  AA PSEC RI_S   pH   pE   pL PACC PREL RI_A Pbie 
   1   M    L    9    0    0    9  152   81    1    e 
   2   E    E    3    0    5    3   95   49    2    e 
   3   A    E    8    0    8    1    0    0    6    b 
   4   L    E    9    0    9    0    0    0    7    b 
   5   L    E    9    0    9    0    0    0    9    b 
   6   V    E    9    0    9    0    0    0    9    b 
   7   I    E    9    0    9    0    0    0    9    b 
   8   N    E    1    0    5    4    0    0    2    b 
   9   A    L    8    0    0    8    0    0    7    b 
  10   G    L    9    0    0    9    0    0    4    b 
  11   S    L    4    2    0    6    0    0    1    b 
  12   S    H    5    7    0    2    0    0    2    b 
  13   S    H    7    7    0    1    0    0    4    b 
  14   L    H    8    8    0    0    0    0    6    b 
  15   K    H    8    8    0    0   73   36    0    e 
  16   F    H    9    9    0    0    0    0    7    b 
  17   Q    H    9    8    0    0    0    0    3    b 
  18   I    H    9    8    0    0    0    0    8    b 
  19   F    H    9    9    0    0    0    0    4    b 
  20   G    H    8    8    0    1   41   49    1    e 
  21   I    H    8    8    0    1    0    0    3    b 
  22   A    H    8    8    0    1    0    0    1    b 
  23   T    H    9    9    0    0   69   49    1    e 
  24   A    H    9    9    0    0   51   49    1    e 
  25   G    H    9    9    0    0   41   49    0    e 
  26   L    H    9    9    0    0    0    0    0    b 
  27   E    H    9    9    0    0   95   49    1    e 
  28   R    H    9    9    0    0  121   49    1    e 
  29   Q    H    8    8    0    1   97   49    2    e 
  30   V    H    7    7    0    1    0    0    0    b 
  31   R    H    1    5    0    4   89   36    2    e 
  32   A    H    1    4    1    4    0    0    4    b 
  33   K    H    2    4    2    2  100   49    2    e 
  34   L    H    1    4    2    3   59   36    0    e 
  35   D    L    4    2    1    6   79   49    1    e 
  36   G    L    7    1    0    8    0    0    3    b 
  37   I    L    4    0    2    6    0    0    2    b 
  38   A    L    8    0    0    8   51   49    3    e 
  39   T    L    9    0    0    9   69   49    2    e 
  40   Q    L    9    0    0    9   97   49    2    e 
  41   P    L    5    2    0    7   66   49    3    e 
  42   R    L    1    4    0    5  121   49    3    e 
  43   L    L    1    4    0    4   80   49    1    e 
  44   K    L    2    5    0    3  100   49    2    e 
  45   A    L    4    2    1    5   51   49    0    e 
  46   T    L    6    1    1    7   69   49    4    e 
  47   A    L    6    1    0    7   85   81    0    e 
  48   A    L    7    1    0    8   51   49    5    e 
  49   D    L    5    2    0    6   79   49    6    e 
  50   G    H    4    6    0    3   41   49    0    e 
  51   T    H    3    5    0    3   69   49    3    e 
  52   E    H    6    7    0    1   95   49    5    e 
  53   L    H    5    6    0    2    0    0    4    b 
  54   I    L    1    4    0    4   42   25    0    i 
  55   N    L    7    0    1    7   76   49    3    e 
  56   R    L    8    0    0    8   89   36    1    e 
  57   R    L    8    0    0    8  121   49    2    e 
  58   L    L    7    1    0    8   80   49    1    e 
  59   D    L    1    4    0    5   79   49    1    e 
  60   A    H    5    7    0    2   67   64    3    e 
  61   T    H    4    6    0    3   69   49    4    e 
  62   A    H    5    7    0    2    0    0    5    b 
  63   V    H    9    9    0    0    0    0    2    b 
  64   P    H    9    9    0    0   66   49    5    e 
  65   D    H    9    9    0    0   79   49    3    e 
  66   L    H    9    9    0    0    0    0    5    b 
  67   P    H    9    9    0    0    0    0    0    b 
  68   E    H    9    9    0    0   95   49    6    e 
  69   A    H    9    9    0    0    0    0    6    b 
  70   L    H    9    9    0    0    0    0    4    b 
  71   S    H    4    6    0    3   63   49    2    e 
  72   V    H    7    8    0    1   69   49    3    e 
  73   A    H    9    8    0    0   51   49    1    e 
  74   R    H    9    9    0    0  121   49    2    e 
  75   D    H    9    9    0    0   79   49    2    e 
  76   W    H    8    8    0    1   81   36    1    e 
  77   L    H    8    8    0    0    0    0    4    b 
  78   A    H    6    7    1    1    0    0    1    b 
  79   T    H    5    6    1    1   69   49    2    e 
  80   L    H    2    5    0    3   59   36    0    e 
  81   R    L    4    3    0    6   89   36    1    e 
  82   G    L    8    0    1    8    0    0    2    b 
  83   F    L    5    0    1    7    0    0    1    b 
  84   D    E    4    0    6    2   58   36    1    e 
  85   L    E    5    1    6    2    0    0    6    b 
  86   R    E    3    1    5    3   62   25    1    i 
  87   A    E    2    1    5    3    0    0    8    b 
  88   I    E    3    0    6    3    0    0    5    b 
  89   G    E    4    0    6    3    0    0    5    b 
  90   H    E    4    0    6    3    0    0    3    b 
  91   R    E    7    0    8    1    0    0    4    b 
  92   V    E    6    0    7    1    0    0    9    b 
  93   V    E    2    0    5    4    0    0    6    b 
  94   H    L    4    0    3    6    0    0    0    b 
  95   G    L    9    0    0    9    0    0    4    b 
  96   G    L    9    0    0    9    0    0    2    b 
  97   P    L    1    4    0    5   66   49    4    e 
  98   D    L    1    4    0    4   79   49    5    e 
  99   Y    L    1    4    0    4    0    0    0    b 
 100   V    L    2    3    1    5    0    0    1    b 
 101   R    H    3    6    0    3   89   36    1    e 
 102   P    H    3    5    1    3    0    0    0    b 
 103   V    H    2    4    1    3    0    0    0    b 
 104   L    L    2    2    2    4    0    0    5    b 
 105   I    L    1    2    3    3    0    0    0    b 
 106   E    L    1    3    1    4   95   49    2    e 
 107   T    H    5    6    0    2   69   49    2    e 
 108   T    H    8    8    0    0    0    0    0    b 
 109   V    H    9    9    0    0    0    0    5    b 
 110   L    H    9    9    0    0   80   49    2    e 
 111   D    H    9    9    0    0   79   49    5    e 
 112   R    H    9    9    0    0   89   36    0    e 
 113   L    H    9    9    0    0    0    0    2    b 
 114   A    H    9    9    0    0   51   49    4    e 
 115   S    H    8    8    0    1   63   49    3    e 
 116   Y    H    9    9    0    0    0    0    1    b 
 117   Q    H    6    7    0    2   71   36    0    e 
 118   D    H    6    7    0    2   79   49    1    e 
 119   L    H    4    6    0    3    0    0    6    b 
 120   A    L    3    3    0    6    0    0    7    b 
 121   P    L    4    3    0    6    0    0    1    b 
 122   L    L    6    1    0    7    0    0    0    b 
 123   H    L    8    0    0    8   16    9    0    i 
 124   Q    L    9    0    0    9   71   36    0    e 
 125   P    L    5    2    0    7   21   16    0    i 
 126   N    L    4    3    0    6  100   64    3    e 
 127   N    L    6    2    0    7    0    0    0    b 
 128   L    L    3    3    0    6    0    0    2    b 
 129   A    H    3    6    0    3    0    0    1    b 
 130   P    H    5    6    0    2   66   49    0    e 
 131   I    H    5    7    0    2    0    0    7    b 
 132   R    H    5    7    1    1   89   36    1    e 
 133   L    H    3    5    3    1    0    0    4    b 
 134   A    H    4    6    2    1    0    0    4    b 
 135   M    H    1    3    2    3    0    0    3    b 
 136   D    L    0    2    3    3   79   49    2    e 
 137   I    L    3    1    2    5    0    0    5    b 
 138   K    L    7    0    1    8   73   36    1    e 
 139   P    L    9    0    0    9   66   49    1    e 
 140   D    L    9    0    0    9  132   81    3    e 
 141   V    L    9    0    0    9   12    9    0    i 
 142   P    L    6    0    2    7    0    0    1    b 
 143   Q    E    4    0    6    3   71   36    0    e 
 144   V    E    7    0    8    1    0    0    9    b 
 145   A    E    7    0    8    1    0    0    5    b 
 146   C    E    9    0    9    0    0    0    6    b 
 147   F    E    7    0    8    1    0    0    8    b 
 148   D    E    4    0    7    2    0    0    4    b 
 149   T    L    3    2    2    5    0    0    4    b 
 150   A    L    0    4    0    4    0    0    8    b 
 151   F    L    2    5    0    4    0    0    4    b 
 152   H    L    2    3    0    5    0    0    1    b 
 153   R    L    7    1    0    7  121   49    2    e 
 154   G    L    9    0    0    9   41   49    1    e 
 155   R    L    9    0    0    9   62   25    0    i 
 156   T    L    9    0    0    9   69   49    2    e 
 157   E    L    4    3    0    6   95   49    5    e 
 158   H    L    2    3    0    5   46   25    1    i 
 159   T    L    3    3    1    5    0    0    2    b 
 160   D    L    3    3    1    5   58   36    1    e 
 161   C    L    3    1    2    5    0    0    4    b 
 162   Y    L    5    0    2    6    0    0    1    b 
 163   A    L    5    1    2    6    0    0    8    b 
 164   L    L    7    1    0    7    0    0    4    b 
 165   P    L    5    1    1    7    0    0    4    b 
 166   R    H    1    4    0    4   89   36    1    e 
 167   T    H    5    7    0    2   69   49    2    e 
 168   F    H    6    7    0    1    0    0    6    b 
 169   Y    H    5    6    0    2    0    0    1    b 
 170   E    H    3    5    0    3   95   49    0    e 
 171   Q    H    1    4    0    4   71   36    1    e 
 172   G    L    1    4    1    4    0    0    5    b 
 173   V    L    2    5    1    3    0    0    8    b 
 174   R    E    1    3    4    2   62   25    0    i 
 175   R    E    3    2    5    1   89   36    1    e 
 176   Y    E    2    2    4    2    0    0    5    b 
 177   G    L    2    3    2    4    0    0    5    b 
 178   F    L    5    2    0    6    0    0    5    b 
 179   H    L    6    2    0    7   46   25    0    i 
 180   G    H    3    6    0    3    0    0    4    b 
 181   I    H    2    5    0    3    0    0    0    b 
 182   S    H    8    8    0    1    0    0    6    b 
 183   Y    H    9    9    0    0   55   25    0    i 
 184   E    H    9    9    0    0   95   49    3    e 
 185   Y    H    9    9    0    0    0    0    2    b 
 186   I    H    9    9    0    0    0    0    8    b 
 187   A    H    9    9    0    0    0    0    7    b 
 188   G    H    9    9    0    0   41   49    2    e 
 189   R    H    9    9    0    0    0    0    0    b 
 190   L    H    9    9    0    0    0    0    3    b 
 191   R    H    9    9    0    0  121   49    1    e 
 192   E    H    9    9    0    0   95   49    3    e 
 193   V    H    9    9    0    0    0    0    1    b 
 194   A    H    8    8    0    1    0    0    1    b 
 195   P    H    3    6    0    3   66   49    3    e 
 196   E    H    2    5    0    4   95   49    5    e 
 197   V    L    2    4    0    5   69   49    2    e 
 198   A    L    6    2    0    7    0    0    2    b 
 199   R    L    5    0    2    6  121   49    5    e 
 200   G    L    2    0    4    5   41   49    2    e 
 201   R    E    7    0    8    1   89   36    2    e 
 202   V    E    9    0    9    0    0    0    7    b 
 203   I    E    9    0    9    0    0    0    9    b 
 204   V    E    9    0    9    0    0    0    7    b 
 205   A    E    9    0    8    0    0    0    7    b 
 206   H    E    6    0    7    1    0    0    5    b 
 207   L    L    4    0    2    6    0    0    6    b 
 208   G    L    9    0    0    9    0    0    1    b 
 209   S    L    8    1    0    8   63   49    2    e 
 210   G    L    2    4    0    5    0    0    1    b 
 211   A    H    2    5    0    3    0    0    2    b 
 212   S    H    4    6    0    2    0    0    5    b 
 213   M    H    6    7    1    1    0    0    2    b 
 214   C    H    7    7    1    0    0    0    2    b 
 215   A    H    5    7    2    0    0    0    9    b 
 216   L    H    1    3    3    2    0    0    2    b 
 217   K    L    4    2    1    6  100   49    6    e 
 218   D    L    8    0    0    8  104   64    3    e 
 219   G    L    9    0    0    9    0    0    1    b 
 220   R    L    9    0    0    9  121   49    2    e 
 221   S    E    2    0    5    4   46   36    0    e 
 222   V    E    7    0    8    1    0    0    6    b 
 223   E    E    9    0    8    0   69   36    0    e 
 224   T    E    8    0    8    0    0    0    6    b 
 225   T    E    7    0    8    1    0    0    3    b 
 226   M    L    2    0    4    5    0    0    3    b 
 227   G    L    5    0    2    6    0    0    1    b 
 228   F    L    5    1    1    6    0    0    4    b 
 229   T    L    5    2    1    6    0    0    3    b 
 230   A    L    2    4    0    5    0    0    3    b 
 231   L    L    1    4    0    4    0    0    4    b 
 232   D    L    3    3    0    5   79   49    1    e 
 233   G    L    4    2    0    6    0    0    5    b 
 234   L    L    6    1    0    7    0    0    4    b 
 235   P    L    7    1    0    8    0    0    0    b 
 236   M    L    9    0    0    9    0    0    3    b 
 237   G    L    9    0    0    8    0    0    3    b 
 238   T    L    9    0    0    9    0    0    1    b 
 239   R    L    7    1    0    8   39   16    1    i 
 240   P    L    8    1    0    8   48   36    0    e 
 241   G    L    9    0    0    9    0    0    1    b 
 242   Q    L    8    0    0    8   97   49    2    e 
 243   L    L    6    1    0    7    0    0    0    b 
 244   D    L    5    2    0    7   26   16    0    i 
 245   P    H    4    6    0    3    0    0    0    b 
 246   G    H    8    8    0    1    0    0    1    b 
 247   V    H    9    8    0    0    0    0    7    b 
 248   V    H    9    9    0    0    0    0    9    b 
 249   L    H    9    9    0    0    0    0    2    b 
 250   H    H    9    9    0    0    0    0    1    b 
 251   L    H    9    9    0    0    0    0    6    b 
 252   L    H    8    8    0    1    0    0    6    b 
 253   T    H    8    8    0    1   69   49    2    e 
 254   D    H    6    7    0    2   79   49    5    e 
 255   Q    H    1    5    0    4   97   49    2    e 
 256   G    L    8    1    0    8    0    0    1    b 
 257   M    L    8    1    0    8    0    0    0    b 
 258   S    L    5    2    0    6   63   49    2    e 
 259   A    H    3    6    0    3   38   36    0    e 
 260   Q    H    9    9    0    0   97   49    2    e 
 261   A    H    9    9    0    0   38   36    0    e 
 262   V    H    9    9    0    0    0    0    7    b 
 263   S    H    9    9    0    0   63   49    1    e 
 264   D    H    9    9    0    0   79   49    4    e 
 265   L    H    9    9    0    0    0    0    3    b 
 266   L    H    8    8    0    0    0    0    4    b 
 267   Y    H    5    7    0    2  108   49    2    e 
 268   H    H    4    6    0    2   66   36    2    e 
 269   R    L    3    3    0    6   89   36    1    e 
 270   S    L    9    0    0    9    0    0    3    b 
 271   G    L    8    0    0    8    0    0    1    b 
 272   L    L    5    0    2    6    0    0    1    b 
 273   K    E    3    0    5    3   73   36    2    e 
 274   G    E    4    0    6    3    0    0    5    b 
 275   L    L    1    0    4    4    0    0    4    b 
 276   S    L    2    0    4    5    0    0    2    b 
 277   G    L    2    0    4    5    0    0    2    b 
 278   I    L    5    0    2    6    0    0    4    b 
 279   S    L    4    2    1    5    0    0    2    b 
 280   N    L    4    3    0    6    0    0    0    b 
 281   D    H    5    7    0    2   58   36    0    e 
 282   M    H    8    8    0    1    0    0    4    b 
 283   R    H    9    9    0    0   89   36    0    e 
 284   E    H    9    9    0    0   69   36    2    e 
 285   L    H    6    7    0    2    0    0    4    b 
 286   L    H    3    6    0    3   59   36    0    e 
 287   G    L    6    2    0    7   41   49    2    e 
 288   S    L    8    1    0    8   63   49    5    e 
 289   D    L    9    0    0    9  104   64    3    e 
 290   D    L    8    1    0    8   79   49    1    e 
 291   P    L    2    4    0    5   66   49    2    e 
 292   R    H    5    7    0    2  121   49    3    e 
 293   A    H    4    6    0    2    0    0    7    b 
 294   S    H    8    8    0    0   46   36    2    e 
 295   F    H    9    9    0    0    0    0    4    b 
 296   A    H    9    9    0    0    0    0    9    b 
 297   I    H    9    9    0    0    0    0    7    b 
 298   D    H    9    9    0    0   58   36    1    e 
 299   H    H    9    9    0    0    0    0    2    b 
 300   F    H    9    9    0    0    0    0    8    b 
 301   V    H    9    9    0    0    0    0    2    b 
 302   H    H    9    9    0    0   66   36    0    e 
 303   R    H    9    9    0    0   89   36    2    e 
 304   C    H    9    9    0    0    0    0    5    b 
 305   A    H    9    8    0    0   51   49    1    e 
 306   L    H    6    7    0    1   80   49    1    e 
 307   D    H    6    7    0    2   79   49    1    e 
 308   A    H    2    5    0    4    0    0    1    b 
 309   G    L    2    3    0    5    0    0    1    b 
 310   M    L    4    2    1    5   67   36    1    e 
 311   L    E    3    2    5    2    0    0    2    b 
 312   A    E    1    3    4    1    0    0    5    b 
 313   A    E    3    2    5    1    0    0    9    b 
 314   A    L    1    4    3    2    0    0    2    b 
 315   L    L    2    2    3    4    0    0    5    b 
 316   G    L    8    1    0    8   41   49    2    e 
 317   G    L    8    0    0    8    0    0    2    b 
 318   L    L    8    0    0    8    0    0    0    b 
 319   D    L    2    0    4    5    0    0    0    b 
 320   A    E    6    0    7    2    0    0    9    b 
 321   F    E    8    0    8    0    0    0    5    b 
 322   V    E    9    0    9    0    0    0    9    b 
 323   F    E    9    0    8    0    0    0    9    b 
 324   T    E    6    0    7    2    0    0    8    b 
 325   A    L    4    0    2    6    0    0    7    b 
 326   G    L    5    1    1    6    0    0    3    b 
 327   I    L    6    1    1    7    0    0    5    b 
 328   G    L    3    3    0    6    0    0    1    b 
 329   E    L    3    3    0    5   69   36    1    e 
 330   N    L    4    3    0    6    0    0    2    b 
 331   S    H    1    5    0    4    0    0    4    b 
 332   A    H    8    8    0    1    0    0    3    b 
 333   P    H    9    9    0    0   66   49    1    e 
 334   I    H    9    9    0    0    0    0    7    b 
 335   R    H    9    9    0    0   62   25    0    i 
 336   A    H    9    9    0    0   51   49    2    e 
 337   R    H    9    9    0    0   62   25    0    i 
 338   V    H    9    9    0    0    0    0    6    b 
 339   S    H    9    9    0    0    0    0    0    b 
 340   E    H    9    9    0    0   95   49    5    e 
 341   G    H    9    9    0    0    0    0    5    b 
 342   L    H    9    9    0    0    0    0    4    b 
 343   A    H    9    9    0    0   51   49    2    e 
 344   W    H    9    9    0    0  111   49    1    e 
 345   L    H    8    8    0    1    0    0    4    b 
 346   G    H    6    7    0    2    0    0    5    b 
 347   A    H    6    7    0    1    0    0    2    b 
 348   E    H    5    6    1    1   95   49    4    e 
 349   L    L    4    2    1    6    0    0    2    b 
 350   D    L    8    0    0    8   40   25    0    i 
 351   P    L    2    3    0    5   66   49    5    e 
 352   A    L    3    5    0    3   51   49    4    e 
 353   A    L    0    4    0    4   51   49    2    e 
 354   N    L    7    1    0    8   76   49    0    e 
 355   D    L    7    1    0    8   79   49    6    e 
 356   A    L    8    0    0    8   85   81    2    e 
 357   G    L    9    0    0    9   41   49    3    e 
 358   A    L    8    0    1    8    0    0    2    b 
 359   S    L    2    0    4    5   63   49    5    e 
 360   V    E    4    0    6    2   69   49    1    e 
 361   I    E    3    0    6    3    0    0    5    b 
 362   S    L    4    0    3    6    0    0    3    b 
 363   K    L    6    0    2    7  100   49    3    e 
 364   A    L    8    0    0    8   51   49    1    e 
 365   G    L    8    0    0    8   41   49    0    e 
 366   S    L    4    0    2    6  105   81    0    e 
 367   R    E    6    0    7    2  121   49    3    e 
 368   V    E    8    0    8    1    0    0    8    b 
 369   A    E    8    0    8    0    0    0    0    b 
 370   L    E    9    0    9    0    0    0    8    b 
 371   H    E    7    0    8    1    0    0    1    b 
 372   V    E    4    0    6    3    0    0    8    b 
 373   M    L    6    0    1    8    0    0    1    b 
 374   P    L    9    0    0    9    0    0    1    b 
 375   T    L    9    0    0    9    0    0    0    b 
 376   D    H    8    8    0    1   58   36    0    e 
 377   E    H    9    9    0    0   69   36    1    e 
 378   E    H    9    9    0    0    0    0    0    b 
 379   L    H    9    9    0    0    0    0    8    b 
 380   M    H    9    9    0    0    0    0    3    b 
 381   I    H    9    9    0    0    0    0    7    b 
 382   A    H    9    9    0    0    0    0    6    b 
 383   R    H    9    9    0    0   89   36    1    e 
 384   H    H    9    9    0    0   66   36    1    e 
 385   T    H    9    9    0    0    0    0    5    b 
 386   L    H    9    9    0    0   59   36    1    e 
 387   A    H    9    9    0    0   51   49    2    e 
 388   I    H    9    9    0    0    0    0    5    b 
 389   I    H    9    9    0    0    0    0    6    b 
 390   R    H    7    8    0    1   89   36    3    e 
 391   A    L    1    4    0    5    0    0    1    b 
 392   R    L    9    0    0    9  200   81    1    e 
--- 
--- PHD PREDICTION COLUMN FORMAT END
---

PHD in RDB format

# Perl-RDB
# PHDsec+PHDacc
# Prediction of secondary structure, and accessibility
# 
# 
# PDBID         : predict_h31733
# LENGTH        :   392
# 
# NOTATION No   : residue number 
# NOTATION AA   : amino acid one letter code
# NOTATION OHEL : observed secondary structure
# NOTATION PHEL : predicted secondary structure,  H=helix, E=strand, L=non-regular (taken from DSSP)
# NOTATION RI_S : reliability of secondary structure prediction ,  0-9,   (0 low, 9 high)
# NOTATION OtH  : network output for helix,                        0-100, (0 low, 100 high)
# NOTATION OtE  : network output for strand,                       0-100, (0 low, 100 high)
# NOTATION OtL  : network output for loop,                         0-100, (0 low, 100 high)
# NOTATION OACC : observed accessible surface area (from DSSP),    0-300 A**2
# NOTATION PACC : predicted accessible surface area,               0-300 A**2
# NOTATION OREL : observed relative accessible surface area,       0-100
# NOTATION PREL : predicted relative accessible surface area,      0-100
# NOTATION RI_A : reliability of accessibility prediction,         0-9,   (0 low, 9 high)
# NOTATION Obie : observed exposure state
# NOTATION Pbie : predicted exposure state, b=buried, i=intermediate, e=exposed
# NOTATION OTN  : observed transmembrane helices
# NOTATION PTN  : predicted transmembrane helices, T=helical membrane, N=no helical transmembrane
# NOTATION PFTN : filtered prediction of transmembrane helices
# NOTATION PRTN : refined prediction (maximum score model)
# NOTATION PiTo : predicted topology of transmembrane regions, i=loop inside, T=transmembrane, o=loop outside
# NOTATION RI_H : reliability of secondary structure prediction ,  0-9,   (0 low, 9 high)
# NOTATION OtT  : network output for helix,                        0-100, (0 low, 100 high)
# NOTATION OtN  : network output for loop,                         0-100, (0 low, 100 high)
# 
No	AA	PHEL	RI_S	OtH	OtE	OtL	PACC	PREL	RI_A	Pbie	Ot0	Ot1	Ot2	Ot3	Ot4	Ot5	Ot6	Ot7	Ot8	Ot9
   1	M	L	9	  0	  2	 97	152	 81	1	e	  6	  6	  6	  6	  6	  6	  5	  6	 10	 12
   2	E	E	3	  3	 57	 37	 95	 49	2	e	  2	  2	  4	  5	  7	 10	 13	 14	 13	 12
   3	A	E	8	  2	 85	 13	  0	  0	6	b	 30	 23	  9	  7	  6	  5	  5	  4	  3	  2
   4	L	E	9	  1	 91	  6	  0	  0	7	b	 35	 27	 13	 10	  8	  6	  4	  2	  1	  1
   5	L	E	9	  1	 90	  8	  0	  0	9	b	 42	 32	 13	  9	  7	  5	  4	  2	  1	  1
   6	V	E	9	  1	 89	  7	  0	  0	9	b	 43	 32	 12	  9	  7	  5	  4	  2	  1	  1
   7	I	E	9	  1	 90	  8	  0	  0	9	b	 42	 33	 14	 10	  7	  5	  3	  2	  1	  1
   8	N	E	1	  2	 54	 46	  0	  0	2	b	 19	 16	 10	  9	  9	  8	  7	  6	  4	  3
   9	A	L	8	  4	  9	 86	  0	  0	7	b	 34	 26	 11	  8	  6	  5	  4	  4	  4	  3
  10	G	L	9	  6	  3	 90	  0	  0	4	b	 23	 18	 11	  8	  7	  6	  5	  5	  4	  4
  11	S	L	4	 27	  5	 61	  0	  0	1	b	 16	 14	 10	  9	  9	  8	  7	  6	  4	  3
  12	S	H	5	 72	  4	 25	  0	  0	2	b	 16	 14	  9	  8	  8	  9	  8	  7	  5	  3
  13	S	H	7	 79	  3	 17	  0	  0	4	b	 24	 19	 10	  9	  8	  7	  7	  6	  4	  3
  14	L	H	8	 88	  3	 10	  0	  0	6	b	 33	 27	 15	 11	  9	  6	  4	  2	  1	  1
  15	K	H	8	 87	  4	  8	 73	 36	0	e	  8	  7	  6	  6	  8	 10	 11	  9	  6	  4
  16	F	H	9	 93	  4	  5	  0	  0	7	b	 34	 27	 14	 10	  8	  6	  4	  3	  1	  1
  17	Q	H	9	 89	  3	  8	  0	  0	3	b	 22	 18	 11	 10	  9	  8	  7	  5	  2	  1
  18	I	H	9	 88	  5	  7	  0	  0	8	b	 37	 29	 14	 10	  7	  5	  4	  2	  1	  1
  19	F	H	9	 91	  4	  5	  0	  0	4	b	 24	 19	  9	  8	  8	  7	  6	  4	  3	  2
  20	G	H	8	 88	  2	 10	 41	 49	1	e	  7	  6	  6	  6	  7	 10	 12	 12	  9	  6
  21	I	H	8	 86	  1	 12	  0	  0	3	b	 22	 17	 10	  9	  8	  7	  6	  4	  3	  2
  22	A	H	8	 86	  0	 15	  0	  0	1	b	 12	 11	  8	  8	  8	  8	  8	  7	  5	  4
  23	T	H	9	 92	  0	  9	 69	 49	1	e	  4	  4	  5	  6	  8	 10	 12	 13	 11	 10
  24	A	H	9	 95	  0	  4	 51	 49	1	e	  3	  4	  5	  6	  7	  9	 11	 13	 12	 11
  25	G	H	9	 94	  0	  5	 41	 49	0	e	  8	  7	  6	  6	  7	  8	 10	 10	  9	  8
  26	L	H	9	 96	  0	  3	  0	  0	0	b	 10	  9	  6	  6	  7	  7	  8	  8	  7	  5
  27	E	H	9	 95	  1	  4	 95	 49	1	e	  3	  3	  4	  6	  7	 10	 13	 14	 12	 10
  28	R	H	9	 90	  1	  7	121	 49	1	e	  5	  5	  5	  6	  7	  8	 10	 12	 11	 10
  29	Q	H	8	 86	  2	 10	 97	 49	2	e	  4	  4	  4	  5	  7	 10	 14	 15	 13	  9
  30	V	H	7	 78	  6	 15	  0	  0	0	b	 10	  9	  6	  6	  7	  8	  9	  9	  7	  5
  31	R	H	1	 48	  6	 41	 89	 36	2	e	  4	  4	  5	  7	 10	 12	 14	 13	  9	  6
  32	A	H	1	 39	 18	 38	  0	  0	4	b	 20	 16	  7	  6	  6	  6	  6	  6	  5	  5
  33	K	H	2	 44	 28	 26	100	 49	2	e	  2	  2	  3	  5	  8	 12	 17	 18	 14	 10
  34	L	H	1	 40	 21	 32	 59	 36	0	e	  6	  6	  7	  7	  8	  9	  9	  8	  7	  6
  35	D	L	4	 23	 11	 62	 79	 49	1	e	  4	  4	  5	  6	  8	 10	 13	 14	 11	  9
  36	G	L	7	 10	  9	 77	  0	  0	3	b	 18	 15	  9	  7	  7	  6	  6	  6	  5	  4
  37	I	L	4	 10	 27	 64	  0	  0	2	b	 18	 15	 10	  8	  7	  6	  4	  3	  3	  2
  38	A	L	8	  3	  8	 85	 51	 49	3	e	  2	  3	  4	  5	  7	 11	 16	 19	 17	 15
  39	T	L	9	  1	  2	 96	 69	 49	2	e	  2	  3	  4	  6	  8	 10	 14	 16	 15	 14
  40	Q	L	9	  3	  1	 96	 97	 49	2	e	  2	  3	  5	  6	  9	 12	 14	 16	 13	 12
  41	P	L	5	 24	  4	 72	 66	 49	3	e	  2	  3	  4	  6	  8	 11	 16	 20	 18	 15
  42	R	L	1	 49	  2	 53	121	 49	3	e	  1	  2	  3	  6	  9	 13	 19	 22	 19	 15
  43	L	L	1	 49	  3	 47	 80	 49	1	e	  3	  3	  4	  6	  8	 10	 13	 14	 11	  9
  44	K	L	2	 55	  5	 39	100	 49	2	e	  1	  2	  3	  5	  7	 11	 15	 16	 13	 10
  45	A	L	4	 24	 14	 55	 51	 49	0	e	  4	  5	  5	  6	  7	  8	  9	 10	  9	  8
  46	T	L	6	 11	 13	 70	 69	 49	4	e	  2	  2	  3	  5	  8	 12	 19	 22	 19	 15
  47	A	L	6	 17	  3	 74	 85	 81	0	e	  6	  6	  5	  6	  7	  8	  9	 11	 12	 12
  48	A	L	7	 15	  1	 85	 51	 49	5	e	  1	  1	  2	  4	  7	 13	 20	 25	 23	 21
  49	D	L	5	 31	  1	 74	 79	 49	6	e	  0	  1	  2	  4	  7	 14	 23	 30	 28	 24
  50	G	H	4	 62	  2	 31	 41	 49	0	e	  6	  6	  6	  7	  8	  9	 10	 11	  9	  8
  51	T	H	3	 60	  5	 36	 69	 49	3	e	  2	  3	  4	  5	  8	 12	 17	 20	 17	 14
  52	E	H	6	 76	  6	 16	 95	 49	5	e	  1	  1	  2	  4	  7	 13	 21	 25	 22	 18
  53	L	H	5	 70	  9	 25	  0	  0	4	b	 26	 22	 14	 11	  8	  5	  3	  2	  1	  1
  54	I	L	1	 45	  6	 49	 42	 25	0	i	  8	  7	  7	  8	  8	  8	  8	  8	  6	  5
  55	N	L	7	  9	 10	 75	 76	 49	3	e	  2	  3	  3	  5	  7	 10	 16	 19	 18	 15
  56	R	L	8	  8	  6	 83	 89	 36	1	e	  3	  4	  6	  8	 11	 13	 15	 13	  9	  6
  57	R	L	8	  9	  3	 87	121	 49	2	e	  2	  3	  4	  6	  9	 12	 16	 17	 14	 12
  58	L	L	7	 18	  0	 84	 80	 49	1	e	  4	  4	  5	  6	  8	  9	 11	 11	 10	  8
  59	D	L	1	 52	  0	 55	 79	 49	1	e	  3	  3	  5	  7	  9	 12	 15	 15	 12	 10
  60	A	H	5	 73	  1	 27	 67	 64	3	e	  1	  2	  3	  5	  7	 10	 15	 19	 20	 20
  61	T	H	4	 67	  1	 35	 69	 49	4	e	  1	  2	  3	  5	  7	 12	 18	 23	 22	 20
  62	A	H	5	 75	  1	 27	  0	  0	5	b	 26	 21	 11	  9	  7	  5	  4	  3	  3	  2
  63	V	H	9	 93	  2	  5	  0	  0	2	b	 16	 14	 10	  8	  7	  6	  5	  4	  3	  2
  64	P	H	9	 96	  1	  2	 66	 49	5	e	  1	  1	  3	  5	  8	 14	 22	 28	 24	 20
  65	D	H	9	 93	  1	  4	 79	 49	3	e	  2	  2	  3	  4	  7	 10	 16	 20	 18	 16
  66	L	H	9	 90	  0	  8	  0	  0	5	b	 28	 23	 14	 11	  8	  6	  4	  2	  1	  1
  67	P	H	9	 95	  0	  3	  0	  0	0	b	 11	 10	  7	  7	  8	  8	  9	  9	  7	  5
  68	E	H	9	 97	  1	  2	 95	 49	6	e	  1	  1	  2	  4	  7	 14	 24	 30	 26	 20
  69	A	H	9	 97	  1	  2	  0	  0	6	b	 29	 22	  9	  7	  6	  5	  4	  4	  4	  3
  70	L	H	9	 91	  1	  7	  0	  0	4	b	 28	 24	 16	 12	  8	  5	  3	  2	  1	  1
  71	S	H	4	 67	  1	 31	 63	 49	2	e	  4	  4	  5	  6	  9	 11	 15	 15	 12	  9
  72	V	H	7	 81	  1	 17	 69	 49	3	e	  2	  2	  3	  5	  7	 12	 17	 20	 16	 13
  73	A	H	9	 90	  1	 10	 51	 49	1	e	  7	  6	  5	  6	  7	  8	 10	 10	  9	  8
  74	R	H	9	 93	  1	  8	121	 49	2	e	  2	  3	  5	  7	  9	 12	 15	 17	 15	 14
  75	D	H	9	 94	  0	  6	 79	 49	2	e	  4	  4	  4	  5	  6	  8	 12	 15	 14	 13
  76	W	H	8	 85	  2	 10	 81	 36	1	e	  5	  6	  6	  8	  9	 11	 12	 11	  8	  6
  77	L	H	8	 85	  4	  9	  0	  0	4	b	 22	 18	  9	  8	  7	  5	  4	  3	  2	  2
  78	A	H	6	 72	 13	 14	  0	  0	1	b	 13	 11	  8	  7	  7	  7	  7	  6	  4	  3
  79	T	H	5	 65	 13	 19	 69	 49	2	e	  3	  3	  4	  5	  8	 11	 16	 17	 13	 10
  80	L	H	2	 53	  8	 36	 59	 36	0	e	  6	  6	  7	  7	  8	  9	 10	 10	  8	  6
  81	R	L	4	 30	  3	 62	 89	 36	1	e	  5	  6	  7	  8	 10	 12	 12	 10	  6	  5
  82	G	L	8	  5	 10	 81	  0	  0	2	b	 15	 13	  9	  8	  7	  6	  6	  6	  4	  4
  83	F	L	5	  9	 18	 67	  0	  0	1	b	 14	 12	 10	  9	  8	  7	  6	  5	  3	  2
  84	D	E	4	  8	 60	 29	 58	 36	1	e	  6	  6	  6	  7	  9	 10	 11	 10	  6	  4
  85	L	E	5	 13	 63	 22	  0	  0	6	b	 31	 25	 14	 10	  8	  5	  4	  2	  1	  1
  86	R	E	3	 12	 57	 31	 62	 25	1	i	  6	  6	  7	 10	 12	 13	 13	 11	  7	  5
  87	A	E	2	 10	 51	 38	  0	  0	8	b	 39	 30	 13	 10	  7	  4	  3	  2	  2	  2
  88	I	E	3	  4	 59	 35	  0	  0	5	b	 27	 21	 11	  8	  7	  5	  4	  3	  2	  2
  89	G	E	4	  2	 68	 32	  0	  0	5	b	 27	 21	 10	  8	  7	  6	  5	  5	  3	  3
  90	H	E	4	  3	 66	 31	  0	  0	3	b	 22	 18	 12	 11	 10	  8	  6	  4	  2	  2
  91	R	E	7	  4	 80	 13	  0	  0	4	b	 26	 21	 12	 10	  9	  7	  5	  3	  2	  1
  92	V	E	6	  4	 76	 17	  0	  0	9	b	 45	 35	 15	 10	  7	  4	  3	  1	  1	  0
  93	V	E	2	  3	 52	 41	  0	  0	6	b	 33	 26	 13	 10	  8	  6	  3	  2	  1	  1
  94	H	L	4	  4	 29	 62	  0	  0	0	b	 11	 10	  9	  9	  9	  8	  7	  6	  4	  3
  95	G	L	9	  1	  6	 91	  0	  0	4	b	 20	 16	  8	  7	  6	  6	  6	  6	  6	  6
  96	G	L	9	  4	  1	 94	  0	  0	2	b	 16	 14	 11	  9	  8	  7	  6	  5	  4	  4
  97	P	L	1	 43	  2	 52	 66	 49	4	e	  1	  2	  3	  5	  8	 13	 18	 23	 21	 18
  98	D	L	1	 48	  7	 43	 79	 49	5	e	  1	  1	  3	  5	  8	 14	 22	 27	 23	 19
  99	Y	L	1	 41	  9	 44	  0	  0	0	b	 13	 13	 11	 11	  9	  7	  5	  4	  3	  2
 100	V	L	2	 34	 10	 53	  0	  0	1	b	 12	 11	  8	  8	  7	  7	  7	  6	  5	  5
 101	R	H	3	 59	  5	 32	 89	 36	1	e	  5	  5	  7	  9	 11	 13	 14	 11	  7	  5
 102	P	H	3	 52	 12	 30	  0	  0	0	b	 12	 10	  6	  6	  7	  9	 12	 12	  9	  6
 103	V	H	2	 47	 14	 35	  0	  0	0	b	 11	  9	  7	  8	  8	  8	  8	  7	  5	  4
 104	L	L	2	 26	 28	 42	  0	  0	5	b	 28	 22	 12	  9	  7	  5	  4	  3	  2	  1
 105	I	L	1	 27	 31	 36	  0	  0	0	b	  9	  9	  8	  8	  9	  9	  8	  7	  5	  4
 106	E	L	1	 37	 18	 41	 95	 49	2	e	  3	  3	  4	  5	  6	  9	 12	 15	 14	 14
 107	T	H	5	 68	  8	 24	 69	 49	2	e	  2	  3	  4	  6	  8	 12	 16	 17	 14	 10
 108	T	H	8	 89	  2	  9	  0	  0	0	b	 10	  9	  7	  7	  7	  8	  9	 10	  9	  7
 109	V	H	9	 96	  1	  3	  0	  0	5	b	 27	 22	 12	 10	  8	  6	  4	  2	  1	  1
 110	L	H	9	 96	  1	  2	 80	 49	2	e	  2	  3	  4	  6	  9	 12	 16	 16	 12	  9
 111	D	H	9	 97	  1	  1	 79	 49	5	e	  1	  2	  3	  4	  7	 12	 21	 25	 22	 16
 112	R	H	9	 97	  1	  2	 89	 36	0	e	  7	  7	  6	  7	  8	  9	 10	 10	  7	  5
 113	L	H	9	 96	  1	  3	  0	  0	2	b	 19	 16	 12	  9	  8	  6	  5	  4	  3	  2
 114	A	H	9	 96	  0	  4	 51	 49	4	e	  2	  2	  3	  5	  7	 11	 17	 21	 19	 16
 115	S	H	8	 90	  0	 11	 63	 49	3	e	  3	  3	  4	  5	  7	 12	 18	 20	 16	 11
 116	Y	H	9	 90	  1	  9	  0	  0	1	b	 18	 16	 13	 11	  9	  7	  5	  4	  2	  2
 117	Q	H	6	 80	  0	 23	 71	 36	0	e	  9	  8	  8	  8	  8	  8	  9	  9	  7	  6
 118	D	H	6	 81	  1	 21	 79	 49	1	e	  5	  5	  5	  6	  7	  9	 11	 11	  9	  7
 119	L	H	4	 66	  2	 34	  0	  0	6	b	 32	 26	 14	 10	  7	  5	  3	  2	  2	  2
 120	A	L	3	 34	  5	 60	  0	  0	7	b	 36	 29	 15	 11	  8	  5	  3	  2	  1	  1
 121	P	L	4	 30	  1	 67	  0	  0	1	b	 13	 10	  7	  7	  7	  8	  9	  9	  7	  5
 122	L	L	6	 19	  2	 76	  0	  0	0	b	 10	 10	 10	  9	  8	  7	  5	  4	  3	  3
 123	H	L	8	  6	  4	 85	 16	  9	0	i	  8	  8	  9	  9	  9	  9	  7	  6	  5	  4
 124	Q	L	9	  2	  2	 92	 71	 36	0	e	  4	  5	  6	  8	  9	 10	 11	 10	  8	  6
 125	P	L	5	 26	  1	 72	 21	 16	0	i	  9	  9	  8	  9	  9	  9	  8	  7	  5	  4
 126	N	L	4	 31	  2	 62	100	 64	3	e	  2	  3	  4	  5	  7	 10	 15	 20	 21	 20
 127	N	L	6	 20	  1	 78	  0	  0	0	b	  8	  8	  7	  8	  8	  8	  8	  7	  5	  4
 128	L	L	3	 36	  1	 58	  0	  0	2	b	 17	 15	 12	 10	  9	  7	  5	  3	  2	  2
 129	A	H	3	 64	  2	 35	  0	  0	1	b	 11	  9	  6	  7	  7	  7	  7	  8	  6	  6
 130	P	H	5	 67	  3	 27	 66	 49	0	e	  9	  8	  6	  6	  7	  9	 11	 11	  9	  6
 131	I	H	5	 72	  4	 22	  0	  0	7	b	 36	 28	 14	 10	  7	  4	  3	  2	  1	  1
 132	R	H	5	 62	 13	 11	 89	 36	1	e	  7	  6	  6	  7	  9	 11	 12	 11	  8	  6
 133	L	H	3	 53	 27	  9	  0	  0	4	b	 21	 16	  8	  7	  7	  7	  7	  6	  4	  3
 134	A	H	4	 59	 22	 15	  0	  0	4	b	 24	 19	  9	  9	  8	  7	  6	  5	  3	  3
 135	M	H	1	 37	 23	 34	  0	  0	3	b	 20	 16	  8	  7	  6	  6	  5	  5	  5	  5
 136	D	L	0	 25	 32	 32	 79	 49	2	e	  3	  3	  4	  5	  7	  9	 12	 14	 13	 11
 137	I	L	3	 16	 27	 49	  0	  0	5	b	 28	 22	 11	  8	  6	  4	  3	  3	  2	  2
 138	K	L	7	  7	 11	 73	 73	 36	1	e	  3	  4	  6	  7	  9	 10	 11	 10	  8	  7
 139	P	L	9	  2	  3	 93	 66	 49	1	e	  5	  5	  5	  6	  7	  8	 10	 12	 11	 10
 140	D	L	9	  1	  2	 96	132	 81	3	e	  3	  3	  4	  5	  6	  8	 11	 15	 20	 23
 141	V	L	9	  1	  6	 92	 12	  9	0	i	  8	  8	  9	 10	 10	  9	  7	  6	  4	  3
 142	P	L	6	  2	 23	 74	  0	  0	1	b	 13	 11	  8	  7	  7	  7	  8	  8	  6	  5
 143	Q	E	4	  2	 64	 33	 71	 36	0	e	  7	  7	  7	  8	  9	 10	 11	 10	  7	  6
 144	V	E	7	  1	 81	 19	  0	  0	9	b	 42	 32	 15	 10	  7	  5	  3	  2	  1	  1
 145	A	E	7	  1	 84	 17	  0	  0	5	b	 25	 20	 10	  8	  8	  7	  6	  5	  3	  2
 146	C	E	9	  2	 91	  7	  0	  0	6	b	 29	 23	 11	  9	  8	  7	  5	  4	  2	  1
 147	F	E	7	  2	 81	 14	  0	  0	8	b	 39	 31	 17	 11	  8	  5	  3	  2	  1	  1
 148	D	E	4	  4	 63	 23	  0	  0	4	b	 24	 19	 11	  9	  8	  7	  6	  5	  3	  2
 149	T	L	3	 20	 27	 47	  0	  0	4	b	 25	 21	 12	 10	  8	  7	  5	  4	  2	  2
 150	A	L	0	 46	  6	 47	  0	  0	8	b	 38	 29	 13	  9	  7	  5	  3	  2	  2	  1
 151	F	L	2	 55	  5	 42	  0	  0	4	b	 26	 21	 14	 11	  8	  6	  4	  2	  1	  1
 152	H	L	2	 41	  6	 56	  0	  0	1	b	 15	 13	 10	  9	  8	  7	  6	  5	  3	  3
 153	R	L	7	 16	  6	 79	121	 49	2	e	  2	  3	  4	  6	  9	 13	 18	 18	 13	  9
 154	G	L	9	  3	  2	 94	 41	 49	1	e	  5	  5	  5	  6	  7	  9	 12	 13	 11	 10
 155	R	L	9	  2	  3	 94	 62	 25	0	i	  4	  5	  7	  8	  9	 10	  9	  9	  8	  7
 156	T	L	9	  7	  1	 89	 69	 49	2	e	  2	  3	  4	  6	  9	 13	 17	 18	 14	 11
 157	E	L	4	 35	  1	 74	 95	 49	5	e	  1	  2	  3	  4	  7	 12	 20	 24	 23	 19
 158	H	L	2	 39	  5	 56	 46	 25	1	i	  4	  5	  7	  9	 10	 11	 11	 10	  8	  7
 159	T	L	3	 29	 13	 54	  0	  0	2	b	 16	 13	  8	  8	  7	  7	  7	  6	  5	  4
 160	D	L	3	 30	 14	 51	 58	 36	1	e	  7	  6	  6	  7	  9	 10	 11	 11	  8	  6
 161	C	L	3	 16	 28	 51	  0	  0	4	b	 25	 20	 11	  9	  7	  6	  5	  4	  3	  2
 162	Y	L	5	  9	 22	 65	  0	  0	1	b	 17	 15	 13	 12	 10	  7	  5	  3	  2	  2
 163	A	L	5	 11	 20	 62	  0	  0	8	b	 36	 27	 10	  8	  6	  4	  3	  3	  3	  2
 164	L	L	7	 10	  9	 75	  0	  0	4	b	 27	 23	 15	 11	  8	  6	  4	  2	  1	  1
 165	P	L	5	 17	 11	 66	  0	  0	4	b	 24	 19	  9	  8	  8	  7	  7	  6	  4	  2
 166	R	H	1	 44	  7	 42	 89	 36	1	e	  3	  4	  6	  8	 11	 13	 14	 13	 10	  8
 167	T	H	5	 72	  5	 22	 69	 49	2	e	  3	  4	  6	  7	 10	 13	 17	 17	 13	  9
 168	F	H	6	 75	  8	 18	  0	  0	6	b	 32	 26	 13	 10	  8	  5	  4	  3	  2	  1
 169	Y	H	5	 70	  6	 26	  0	  0	1	b	 15	 14	 11	 11	 10	  8	  6	  4	  3	  2
 170	E	H	3	 60	  6	 35	 95	 49	0	e	  3	  4	  5	  7	  8	 10	 11	 11	  8	  7
 171	Q	H	1	 46	  6	 45	 71	 36	1	e	  5	  5	  7	  8	 10	 12	 13	 12	  8	  6
 172	G	L	1	 40	 10	 47	  0	  0	5	b	 27	 21	 11	  9	  8	  6	  5	  5	  3	  3
 173	V	L	2	 47	 15	 31	  0	  0	8	b	 38	 29	 13	 10	  7	  5	  3	  2	  1	  1
 174	R	E	1	 34	 40	 20	 62	 25	0	i	  8	  8	 10	 10	 12	 13	 12	  8	  5	  3
 175	R	E	3	 28	 56	 10	 89	 36	1	e	  8	  7	  7	  8	  9	 11	 12	 10	  7	  4
 176	Y	E	2	 26	 45	 25	  0	  0	5	b	 28	 23	 14	 11	  9	  7	  4	  3	  2	  1
 177	G	L	2	 30	 20	 44	  0	  0	5	b	 29	 23	 12	 10	  8	  7	  5	  4	  2	  1
 178	F	L	5	 21	  9	 61	  0	  0	5	b	 27	 22	 13	 10	  8	  6	  4	  2	  2	  1
 179	H	L	6	 20	  6	 71	 46	 25	0	i	  8	  8	  8	  9	 10	 10	 10	  8	  5	  3
 180	G	H	3	 59	  5	 31	  0	  0	4	b	 22	 18	 10	  9	  7	  6	  5	  4	  3	  3
 181	I	H	2	 50	  6	 33	  0	  0	0	b	 11	 11	 10	 10	 11	 10	  8	  6	  3	  2
 182	S	H	8	 86	  2	 15	  0	  0	6	b	 30	 23	 10	  9	  7	  6	  6	  5	  3	  2
 183	Y	H	9	 96	  1	  4	 55	 25	0	i	  9	  9	  9	 10	 10	 11	 10	  8	  5	  4
 184	E	H	9	 97	  1	  2	 95	 49	3	e	  3	  3	  4	  5	  8	 11	 18	 19	 15	 10
 185	Y	H	9	 97	  1	  2	  0	  0	2	b	 22	 20	 16	 14	 11	  8	  5	  2	  1	  1
 186	I	H	9	 97	  0	  1	  0	  0	8	b	 39	 30	 14	 10	  7	  5	  3	  2	  1	  1
 187	A	H	9	 97	  0	  2	  0	  0	7	b	 32	 24	 10	  7	  6	  5	  5	  4	  3	  2
 188	G	H	9	 96	  0	  3	 41	 49	2	e	  4	  4	  4	  5	  7	  9	 14	 15	 13	 11
 189	R	H	9	 97	  0	  2	  0	  0	0	b	 10	 10	 10	 10	 10	  9	  8	  5	  3	  2
 190	L	H	9	 96	  0	  3	  0	  0	3	b	 20	 16	 10	  8	  8	  7	  6	  5	  4	  3
 191	R	H	9	 97	  0	  2	121	 49	1	e	  8	  7	  5	  6	  8	  9	 11	 13	 11	  8
 192	E	H	9	 94	  0	  5	 95	 49	3	e	  2	  2	  4	  5	  8	 12	 17	 18	 15	 11
 193	V	H	9	 93	  0	  6	  0	  0	1	b	 12	 10	  7	  7	  7	  7	  7	  6	  5	  4
 194	A	H	8	 87	  0	 12	  0	  0	1	b	 11	  9	  7	  7	  6	  7	  7	  7	  6	  5
 195	P	H	3	 62	  0	 41	 66	 49	3	e	  3	  3	  4	  5	  7	 10	 15	 18	 18	 16
 196	E	H	2	 57	  1	 44	 95	 49	5	e	  0	  1	  2	  4	  8	 14	 22	 27	 24	 21
 197	V	L	2	 44	  1	 57	 69	 49	2	e	  3	  3	  4	  6	  8	 11	 15	 16	 12	  9
 198	A	L	6	 20	  5	 71	  0	  0	2	b	 17	 14	  9	  8	  7	  5	  4	  4	  5	  6
 199	R	L	5	  6	 23	 66	121	 49	5	e	  1	  1	  3	  5	  8	 14	 21	 26	 24	 20
 200	G	L	2	  2	 41	 57	 41	 49	2	e	  4	  4	  4	  5	  7	  9	 13	 16	 15	 14
 201	R	E	7	  1	 81	 19	 89	 36	2	e	  3	  3	  5	  6	  9	 12	 15	 15	 11	  8
 202	V	E	9	  1	 93	  5	  0	  0	7	b	 34	 26	 12	  9	  7	  5	  4	  3	  2	  1
 203	I	E	9	  2	 95	  3	  0	  0	9	b	 44	 34	 16	 11	  8	  5	  3	  1	  1	  0
 204	V	E	9	  3	 95	  2	  0	  0	7	b	 33	 24	  9	  7	  7	  7	  7	  6	  4	  2
 205	A	E	9	  6	 89	  5	  0	  0	7	b	 33	 25	 10	  8	  7	  6	  5	  4	  3	  2
 206	H	E	6	  9	 68	 16	  0	  0	5	b	 26	 21	 12	 10	  8	  6	  5	  3	  2	  2
 207	L	L	4	  5	 25	 61	  0	  0	6	b	 31	 25	 13	  9	  7	  5	  3	  2	  2	  1
 208	G	L	9	  3	  3	 93	  0	  0	1	b	 12	 10	  8	  7	  7	  7	  7	  8	  7	  7
 209	S	L	8	 15	  2	 87	 63	 49	2	e	  3	  4	  4	  6	  7	 10	 14	 16	 15	 14
 210	G	L	2	 44	  1	 60	  0	  0	1	b	 13	 11	  8	  8	  7	  7	  7	  7	  6	  6
 211	A	H	2	 57	  6	 40	  0	  0	2	b	 16	 13	  8	  8	  7	  7	  7	  7	  6	  5
 212	S	H	4	 62	  9	 24	  0	  0	5	b	 25	 20	 10	  8	  7	  7	  6	  5	  3	  2
 213	M	H	6	 66	 14	 11	  0	  0	2	b	 19	 16	 11	 10	  8	  7	  6	  4	  3	  2
 214	C	H	7	 79	 16	  4	  0	  0	2	b	 18	 14	  8	  8	  8	  9	  9	  8	  5	  3
 215	A	H	5	 69	 23	  5	  0	  0	9	b	 40	 30	 11	  9	  7	  5	  4	  3	  2	  2
 216	L	H	1	 34	 31	 23	  0	  0	2	b	 17	 15	 10	  9	  8	  6	  5	  4	  3	  3
 217	K	L	4	 26	 11	 59	100	 49	6	e	  0	  1	  2	  4	  7	 14	 23	 30	 27	 24
 218	D	L	8	  5	  8	 81	104	 64	3	e	  3	  3	  4	  5	  6	 10	 15	 19	 20	 19
 219	G	L	9	  2	  4	 93	  0	  0	1	b	 14	 12	 10	  9	  8	  7	  6	  6	  6	  6
 220	R	L	9	  3	  6	 89	121	 49	2	e	  2	  2	  4	  6	 10	 14	 17	 18	 14	 11
 221	S	E	2	  1	 55	 42	 46	 36	0	e	 11	  9	  7	  7	  8	  9	 11	 10	  7	  5
 222	V	E	7	  2	 82	 14	  0	  0	6	b	 31	 24	 12	 10	  7	  5	  4	  2	  1	  1
 223	E	E	9	  1	 89	  9	 69	 36	0	e	  9	  8	  6	  7	  8	  9	 10	  9	  6	  4
 224	T	E	8	  3	 87	  9	  0	  0	6	b	 30	 24	 13	 10	  9	  7	  6	  4	  2	  1
 225	T	E	7	  2	 80	 17	  0	  0	3	b	 19	 15	  9	  8	  8	  8	  8	  7	  5	  4
 226	M	L	2	  3	 40	 57	  0	  0	3	b	 22	 18	 12	  9	  8	  7	  6	  4	  2	  2
 227	G	L	5	  6	 26	 68	  0	  0	1	b	 13	 12	  8	  8	  8	  8	  7	  7	  5	  5
 228	F	L	5	 16	 15	 65	  0	  0	4	b	 28	 23	 16	 12	  9	  6	  4	  2	  1	  1
 229	T	L	5	 20	 12	 64	  0	  0	3	b	 21	 18	 11	  9	  9	  8	  7	  5	  2	  1
 230	A	L	2	 41	  5	 52	  0	  0	3	b	 21	 17	  9	  9	  9	  8	  7	  5	  3	  2
 231	L	L	1	 49	  4	 47	  0	  0	4	b	 25	 21	 15	 11	  8	  5	  3	  2	  2	  2
 232	D	L	3	 41	  2	 62	 79	 49	1	e	  6	  6	  6	  6	  7	  8	 10	 11	  9	  7
 233	G	L	4	 26	  6	 61	  0	  0	5	b	 24	 19	  9	  7	  7	  6	  6	  6	  4	  3
 234	L	L	6	 18	  6	 68	  0	  0	4	b	 25	 21	 14	 11	  9	  6	  4	  2	  1	  1
 235	P	L	7	 10	  6	 76	  0	  0	0	b	 10	 10	  8	  8	  9	  9	 10	  9	  6	  4
 236	M	L	9	  8	  1	 90	  0	  0	3	b	 18	 15	  9	  8	  7	  6	  5	  5	  3	  3
 237	G	L	9	 10	  1	 93	  0	  0	3	b	 20	 16	  9	  8	  7	  7	  6	  6	  5	  4
 238	T	L	9	  6	  2	 91	  0	  0	1	b	 13	 11	  9	  9	  9	  8	  7	  6	  4	  3
 239	R	L	7	 14	  4	 83	 39	 16	1	i	  6	  7	  9	 10	 11	 11	  9	  6	  4	  3
 240	P	L	8	 10	  4	 85	 48	 36	0	e	  8	  8	  8	  8	  9	 10	 11	  9	  7	  5
 241	G	L	9	  4	  4	 87	  0	  0	1	b	 13	 11	  9	  8	  8	  7	  7	  6	  6	  5
 242	Q	L	8	  8	  3	 82	 97	 49	2	e	  3	  3	  4	  6	  8	 12	 15	 17	 14	 12
 243	L	L	6	 18	  2	 72	  0	  0	0	b	 11	 10	  9	  8	  7	  6	  5	  5	  4	  4
 244	D	L	5	 27	  1	 72	 26	 16	0	i	  7	  8	  9	 10	 10	  9	  7	  6	  4	  4
 245	P	H	4	 73	  0	 37	  0	  0	0	b	 11	  9	  8	  7	  7	  7	  7	  7	  6	  5
 246	G	H	8	 86	  1	 15	  0	  0	1	b	 14	 12	  7	  6	  6	  6	  6	  8	  9	  9
 247	V	H	9	 90	  2	  9	  0	  0	7	b	 36	 28	 14	 10	  8	  5	  3	  2	  1	  1
 248	V	H	9	 91	  3	  5	  0	  0	9	b	 44	 34	 15	 10	  7	  5	  3	  1	  1	  0
 249	L	H	9	 97	  1	  2	  0	  0	2	b	 18	 15	  8	  8	  8	  9	  9	  7	  5	  3
 250	H	H	9	 96	  2	  1	  0	  0	1	b	 13	 11	  8	  7	  8	  8	  9	  8	  5	  3
 251	L	H	9	 92	  6	  2	  0	  0	6	b	 32	 26	 15	 11	  8	  5	  3	  2	  1	  1
 252	L	H	8	 84	  6	 10	  0	  0	6	b	 32	 25	 13	  9	  8	  5	  4	  3	  2	  1
 253	T	H	8	 85	  2	 14	 69	 49	2	e	  2	  3	  5	  6	  9	 12	 15	 16	 12	 10
 254	D	H	6	 75	  4	 23	 79	 49	5	e	  1	  2	  3	  4	  7	 12	 19	 24	 23	 20
 255	Q	H	1	 52	  4	 45	 97	 49	2	e	  2	  3	  4	  5	  7	 11	 15	 17	 15	 12
 256	G	L	8	 12	  1	 87	  0	  0	1	b	 13	 11	  8	  7	  7	  7	  7	  7	  6	  5
 257	M	L	8	 11	  1	 84	  0	  0	0	b	 11	 11	 10	  9	  9	  8	  6	  5	  3	  3
 258	S	L	5	 24	  5	 64	 63	 49	2	e	  5	  5	  5	  6	  8	 11	 15	 15	 12	  8
 259	A	H	3	 65	  3	 37	 38	 36	0	e	  8	  8	  7	  7	  8	  9	 10	 10	  7	  5
 260	Q	H	9	 95	  1	  4	 97	 49	2	e	  2	  3	  4	  6	 10	 13	 18	 19	 15	 11
 261	A	H	9	 94	  1	  5	 38	 36	0	e	  8	  8	  6	  7	  8	  8	  9	  9	  7	  6
 262	V	H	9	 96	  1	  2	  0	  0	7	b	 34	 26	 13	 10	  7	  5	  3	  2	  1	  1
 263	S	H	9	 97	  1	  1	 63	 49	1	e	  7	  7	  6	  6	  8	 10	 12	 13	  9	  7
 264	D	H	9	 97	  1	  2	 79	 49	4	e	  3	  3	  4	  5	  8	 12	 19	 21	 17	 12
 265	L	H	9	 93	  2	  4	  0	  0	3	b	 23	 19	 13	 10	  8	  6	  4	  2	  2	  1
 266	L	H	8	 87	  2	  9	  0	  0	4	b	 24	 20	 13	 10	  8	  6	  4	  3	  2	  2
 267	Y	H	5	 70	  9	 21	108	 49	2	e	  4	  4	  5	  6	  8	 10	 13	 15	 13	 11
 268	H	H	4	 65	  6	 28	 66	 36	2	e	  2	  3	  4	  6	  9	 13	 18	 18	 13	  9
 269	R	L	3	 34	  2	 61	 89	 36	1	e	  3	  4	  6	  7	  9	 11	 12	 11	  8	  7
 270	S	L	9	  6	  2	 90	  0	  0	3	b	 18	 15	  8	  7	  6	  6	  7	  7	  7	  6
 271	G	L	8	  3	  8	 85	  0	  0	1	b	 14	 12	  8	  8	  7	  8	  7	  7	  5	  5
 272	L	L	5	  3	 27	 67	  0	  0	1	b	 15	 13	  9	  9	  8	  7	  5	  4	  3	  3
 273	K	E	3	  5	 58	 34	 73	 36	2	e	  3	  3	  4	  6	  9	 12	 16	 16	 12	  8
 274	G	E	4	  6	 63	 33	  0	  0	5	b	 28	 21	  9	  8	  7	  6	  6	  5	  4	  3
 275	L	L	1	  5	 46	 48	  0	  0	4	b	 24	 21	 13	 10	  8	  6	  4	  3	  2	  2
 276	S	L	2	  5	 38	 52	  0	  0	2	b	 17	 14	  9	  8	  7	  7	  7	  6	  5	  4
 277	G	L	2	  8	 38	 49	  0	  0	2	b	 18	 15	  9	  8	  8	  8	  8	  6	  4	  3
 278	I	L	5	  8	 24	 65	  0	  0	4	b	 25	 21	 13	 10	  9	  7	  5	  3	  2	  1
 279	S	L	4	 20	 19	 57	  0	  0	2	b	 19	 16	 12	 10	  9	  8	  6	  5	  3	  2
 280	N	L	4	 32	  6	 63	  0	  0	0	b	 11	 10	  9	  9	  8	  8	  7	  6	  5	  4
 281	D	H	5	 72	  1	 23	 58	 36	0	e	  7	  7	  7	  8	  9	 10	 10	  9	  6	  4
 282	M	H	8	 88	  1	 10	  0	  0	4	b	 24	 21	 14	 11	  9	  7	  4	  3	  2	  2
 283	R	H	9	 91	  2	  7	 89	 36	0	e	  9	  9	  8	  8	  9	  9	  9	  8	  6	  4
 284	E	H	9	 93	  1	  5	 69	 36	2	e	  3	  4	  5	  6	  9	 12	 15	 14	 10	  7
 285	L	H	6	 74	  2	 23	  0	  0	4	b	 24	 20	 12	 10	  7	  5	  3	  2	  2	  2
 286	L	H	3	 61	  1	 36	 59	 36	0	e	  8	  8	  7	  7	  8	  9	  9	  8	  6	  5
 287	G	L	6	 20	  1	 79	 41	 49	2	e	  4	  4	  4	  5	  7	  9	 13	 16	 16	 16
 288	S	L	8	 11	  0	 90	 63	 49	5	e	  0	  1	  2	  4	  7	 14	 22	 27	 26	 24
 289	D	L	9	  5	  0	 94	104	 64	3	e	  2	  2	  3	  5	  7	 11	 16	 22	 22	 21
 290	D	L	8	 11	  0	 86	 79	 49	1	e	  2	  3	  5	  7	 10	 13	 15	 16	 14	 12
 291	P	L	2	 42	  1	 60	 66	 49	2	e	  2	  3	  5	  6	  9	 12	 15	 16	 13	 11
 292	R	H	5	 71	  3	 24	121	 49	3	e	  2	  2	  4	  5	  8	 12	 17	 19	 15	 12
 293	A	H	4	 60	  8	 24	  0	  0	7	b	 34	 26	 10	  8	  7	  5	  4	  3	  2	  2
 294	S	H	8	 81	  5	  9	 46	 36	2	e	  4	  5	  5	  7	  9	 12	 15	 15	 11	  7
 295	F	H	9	 91	  2	  6	  0	  0	4	b	 24	 19	 12	  9	  8	  6	  4	  3	  2	  1
 296	A	H	9	 92	  1	  7	  0	  0	9	b	 43	 33	 13	  9	  7	  5	  4	  3	  1	  1
 297	I	H	9	 97	  1	  2	  0	  0	7	b	 33	 25	 12	  9	  7	  5	  4	  3	  2	  1
 298	D	H	9	 96	  1	  2	 58	 36	1	e	  5	  5	  5	  6	  8	 10	 12	 12	  9	  6
 299	H	H	9	 96	  1	  3	  0	  0	2	b	 17	 15	 10	  9	  9	  8	  7	  5	  3	  2
 300	F	H	9	 95	  1	  4	  0	  0	8	b	 39	 30	 15	 10	  7	  4	  3	  2	  1	  1
 301	V	H	9	 98	  0	  2	  0	  0	2	b	 17	 13	  7	  7	  7	  7	  7	  7	  5	  4
 302	H	H	9	 97	  0	  2	 66	 36	0	e	  7	  7	  6	  7	  8	  9	 10	  9	  7	  5
 303	R	H	9	 97	  1	  1	 89	 36	2	e	  4	  4	  5	  7	 10	 13	 14	 12	  8	  5
 304	C	H	9	 93	  2	  3	  0	  0	5	b	 24	 19	  9	  8	  7	  6	  5	  4	  3	  3
 305	A	H	9	 88	  5	  5	 51	 49	1	e	  5	  5	  5	  6	  7	  9	 11	 12	  9	  7
 306	L	H	6	 75	  5	 17	 80	 49	1	e	  2	  3	  4	  5	  7	 10	 13	 14	 11	  8
 307	D	H	6	 75	  3	 24	 79	 49	1	e	  4	  4	  5	  6	  8	 10	 11	 12	 10	  8
 308	A	H	2	 60	  1	 42	  0	  0	1	b	 13	 11	  7	  6	  6	  6	  7	  7	  7	  6
 309	G	L	2	 39	  5	 55	  0	  0	1	b	 14	 12	  7	  6	  6	  6	  8	  8	  7	  7
 310	M	L	4	 22	 16	 52	 67	 36	1	e	  4	  5	  5	  7	  9	 11	 13	 12	  9	  6
 311	L	E	3	 23	 50	 22	  0	  0	2	b	 16	 14	 10	  9	  8	  7	  6	  5	  3	  2
 312	A	E	1	 37	 45	 14	  0	  0	5	b	 28	 22	 11	  9	  8	  6	  5	  4	  3	  2
 313	A	E	3	 26	 47	 17	  0	  0	9	b	 39	 29	 10	  7	  6	  4	  4	  3	  3	  2
 314	A	L	1	 39	 30	 22	  0	  0	2	b	 16	 13	  8	  7	  7	  7	  7	  6	  4	  3
 315	L	L	2	 21	 28	 43	  0	  0	5	b	 29	 23	 13	 10	  7	  5	  3	  2	  2	  1
 316	G	L	8	 10	  6	 83	 41	 49	2	e	  5	  5	  5	  6	  7	  9	 13	 15	 13	 11
 317	G	L	8	  6	  7	 85	  0	  0	2	b	 17	 14	  8	  7	  7	  6	  6	  7	  6	  6
 318	L	L	8	  3	  8	 87	  0	  0	0	b	 11	 10	  9	  8	  8	  7	  7	  6	  5	  4
 319	D	L	2	  4	 42	 53	  0	  0	0	b	 10	  9	  8	  8	  9	  9	  9	  8	  5	  4
 320	A	E	6	  2	 76	 23	  0	  0	9	b	 40	 30	 12	  9	  7	  5	  4	  3	  2	  1
 321	F	E	8	  4	 86	  8	  0	  0	5	b	 26	 21	 10	  8	  7	  7	  6	  5	  3	  2
 322	V	E	9	  4	 93	  4	  0	  0	9	b	 40	 31	 14	 10	  7	  5	  4	  2	  1	  0
 323	F	E	9	  3	 87	  7	  0	  0	9	b	 45	 34	 15	 11	  8	  5	  3	  2	  1	  0
 324	T	E	6	  3	 73	 22	  0	  0	8	b	 37	 28	 13	  9	  7	  6	  5	  4	  2	  1
 325	A	L	4	  7	 26	 63	  0	  0	7	b	 33	 26	 11	  9	  7	  5	  4	  3	  3	  2
 326	G	L	5	 13	 18	 64	  0	  0	3	b	 22	 18	 12	 10	  9	  7	  6	  4	  3	  2
 327	I	L	6	 16	 11	 69	  0	  0	5	b	 28	 23	 13	 11	  8	  6	  4	  2	  1	  1
 328	G	L	3	 32	  7	 62	  0	  0	1	b	 16	 13	  8	  7	  8	  9	 10	  9	  5	  4
 329	E	L	3	 35	  6	 59	 69	 36	1	e	  4	  4	  5	  7	  9	 10	 12	 11	  9	  6
 330	N	L	4	 33	  1	 70	  0	  0	2	b	 18	 15	 11	  9	  8	  7	  6	  5	  4	  3
 331	S	H	1	 55	  1	 48	  0	  0	4	b	 26	 22	 13	 11	  9	  7	  5	  3	  2	  2
 332	A	H	8	 92	  0	 12	  0	  0	3	b	 21	 16	  9	  8	  8	  7	  6	  5	  4	  3
 333	P	H	9	 95	  1	  6	 66	 49	1	e	  5	  5	  5	  6	  9	 11	 14	 15	 11	  8
 334	I	H	9	 97	  1	  3	  0	  0	7	b	 37	 29	 14	 11	  8	  5	  3	  2	  1	  1
 335	R	H	9	 94	  1	  3	 62	 25	0	i	  9	  9	  8	  9	 10	 10	 10	  8	  5	  3
 336	A	H	9	 95	  1	  3	 51	 49	2	e	  6	  5	  4	  5	  6	  8	 12	 15	 13	 10
 337	R	H	9	 96	  1	  3	 62	 25	0	i	  9	  9	  8	  9	 10	 10	  9	  8	  5	  3
 338	V	H	9	 96	  1	  3	  0	  0	6	b	 33	 26	 13	 10	  8	  5	  3	  2	  1	  1
 339	S	H	9	 97	  0	  2	  0	  0	0	b	 11	  9	  7	  7	  8	  9	 10	 10	  7	  5
 340	E	H	9	 97	  0	  2	 95	 49	5	e	  2	  2	  3	  5	  7	 13	 22	 25	 20	 14
 341	G	H	9	 96	  0	  3	  0	  0	5	b	 26	 20	 10	  8	  7	  6	  5	  4	  3	  3
 342	L	H	9	 94	  0	  6	  0	  0	4	b	 29	 24	 16	 12	  9	  5	  3	  2	  1	  1
 343	A	H	9	 96	  0	  3	 51	 49	2	e	  5	  4	  4	  6	  7	 10	 15	 16	 13	  9
 344	W	H	9	 97	  1	  2	111	 49	1	e	  4	  5	  6	  7	  8	 10	 12	 12	 10	  8
 345	L	H	8	 88	  1	 11	  0	  0	4	b	 22	 18	 11	  9	  7	  6	  5	  3	  2	  1
 346	G	H	6	 73	  3	 22	  0	  0	5	b	 26	 21	 11	  9	  8	  6	  5	  4	  3	  2
 347	A	H	6	 72	  5	 19	  0	  0	2	b	 15	 12	  7	  7	  7	  7	  7	  7	  5	  4
 348	E	H	5	 63	 16	 14	 95	 49	4	e	  1	  1	  3	  5	  8	 15	 22	 24	 19	 14
 349	L	L	4	 18	 14	 57	  0	  0	2	b	 17	 15	 12	 10	  8	  6	  4	  3	  2	  2
 350	D	L	8	  7	  5	 85	 40	 25	0	i	  6	  7	  7	  8	  9	  9	  8	  7	  5	  5
 351	P	L	2	 39	  1	 58	 66	 49	5	e	  1	  2	  3	  5	  8	 13	 21	 27	 25	 22
 352	A	L	3	 58	  2	 37	 51	 49	4	e	  2	  2	  3	  5	  7	 10	 16	 21	 20	 19
 353	A	L	0	 46	  4	 46	 51	 49	2	e	  2	  3	  4	  5	  7	 10	 13	 16	 14	 12
 354	N	L	7	 18	  2	 82	 76	 49	0	e	  7	  7	  6	  7	  7	  8	  8	  9	  7	  6
 355	D	L	7	 15	  2	 84	 79	 49	6	e	  0	  1	  2	  4	  8	 15	 23	 30	 26	 23
 356	A	L	8	  9	  6	 81	 85	 81	2	e	  3	  3	  4	  4	  6	  7	 11	 16	 18	 20
 357	G	L	9	  4	  2	 93	 41	 49	3	e	  2	  3	  4	  6	  9	 12	 17	 19	 15	 12
 358	A	L	8	  2	 10	 86	  0	  0	2	b	 17	 13	  7	  7	  7	  7	  7	  8	  7	  7
 359	S	L	2	  4	 41	 53	 63	 49	5	e	  2	  2	  3	  5	  8	 13	 20	 25	 22	 18
 360	V	E	4	  6	 64	 28	 69	 49	1	e	  4	  4	  4	  5	  7	  8	 11	 12	 11	  9
 361	I	E	3	  6	 59	 32	  0	  0	5	b	 27	 22	 12	  9	  7	  5	  4	  2	  2	  1
 362	S	L	4	  4	 34	 65	  0	  0	3	b	 18	 15	  9	  8	  7	  6	  6	  6	  5	  4
 363	K	L	6	  3	 21	 77	100	 49	3	e	  1	  2	  3	  5	  7	 12	 18	 20	 17	 15
 364	A	L	8	  6	  8	 83	 51	 49	1	e	  5	  5	  5	  6	  7	  9	 11	 13	 12	 11
 365	G	L	8	  5	  9	 85	 41	 49	0	e	  4	  4	  6	  7	  8	 10	 11	 11	 11	 11
 366	S	L	4	  9	 26	 62	105	 81	0	e	 12	 10	  6	  6	  6	  6	  6	  8	 11	 13
 367	R	E	6	  2	 74	 22	121	 49	3	e	  1	  2	  4	  6	  9	 15	 20	 21	 15	 10
 368	V	E	8	  1	 88	 10	  0	  0	8	b	 37	 29	 13	  9	  7	  4	  3	  2	  1	  1
 369	A	E	8	  1	 89	  9	  0	  0	0	b	 13	 11	  9	  9	 10	 10	  9	  7	  5	  3
 370	L	E	9	  1	 91	  8	  0	  0	8	b	 37	 28	 11	  8	  6	  4	  3	  3	  2	  2
 371	H	E	7	  1	 83	 14	  0	  0	1	b	 15	 12	  8	  8	  9	  8	  8	  7	  5	  3
 372	V	E	4	  1	 67	 33	  0	  0	8	b	 38	 29	 12	  9	  7	  5	  3	  2	  1	  1
 373	M	L	6	  1	 17	 76	  0	  0	1	b	 15	 13	 11	 10	  9	  8	  7	  5	  2	  2
 374	P	L	9	  2	  4	 93	  0	  0	1	b	 15	 13	 10	  9	  9	  8	  7	  6	  3	  3
 375	T	L	9	  9	  0	 91	  0	  0	0	b	 11	 10	  9	  9	  9	  8	  7	  6	  4	  3
 376	D	H	8	 89	  0	 15	 58	 36	0	e	  7	  7	  7	  7	  8	  9	 10	 10	  8	  6
 377	E	H	9	 94	  1	  6	 69	 36	1	e	  4	  5	  5	  6	  8	 10	 12	 11	  9	  7
 378	E	H	9	 96	  0	  3	  0	  0	0	b	 10	  9	  7	  7	  8	  8	  8	  8	  5	  4
 379	L	H	9	 96	  1	  3	  0	  0	8	b	 38	 30	 17	 11	  8	  5	  3	  2	  1	  0
 380	M	H	9	 94	  1	  4	  0	  0	3	b	 22	 17	 10	  9	  9	  8	  8	  6	  3	  2
 381	I	H	9	 96	  0	  3	  0	  0	7	b	 33	 25	 11	  8	  7	  5	  4	  3	  2	  1
 382	A	H	9	 95	  0	  3	  0	  0	6	b	 30	 23	 11	  9	  7	  6	  5	  4	  2	  1
 383	R	H	9	 96	  0	  3	 89	 36	1	e	  6	  6	  6	  7	  9	 11	 12	 11	  8	  5
 384	H	H	9	 96	  0	  3	 66	 36	1	e	  6	  6	  6	  7	  8	 10	 12	 12	  9	  6
 385	T	H	9	 97	  0	  3	  0	  0	5	b	 30	 24	 12	 10	  9	  7	  5	  4	  2	  1
 386	L	H	9	 98	  0	  1	 59	 36	1	e	  5	  5	  6	  6	  8	 10	 12	 12	  8	  5
 387	A	H	9	 98	  1	  0	 51	 49	2	e	  6	  6	  5	  6	  7	 10	 14	 15	 12	  8
 388	I	H	9	 98	  1	  1	  0	  0	5	b	 30	 24	 13	 10	  8	  5	  3	  2	  1	  1
 389	I	H	9	 96	  1	  2	  0	  0	6	b	 31	 24	 11	  9	  7	  5	  4	  3	  1	  1
 390	R	H	7	 80	  3	 16	 89	 36	3	e	  2	  3	  4	  7	 11	 15	 18	 16	 11	  6
 391	A	L	1	 46	  3	 49	  0	  0	1	b	 13	 10	  6	  5	  5	  5	  5	  6	  8	  9
 392	R	L	9	  9	  1	 93	200	 81	1	e	  2	  2	  4	  6	  8	  9	 10	 11	 13	 15

Ambivalent Sequence Predictor(Malin Young, Kent Kirshenbaum, Stefan Highsmith)

TOP - BOTTOM - ASP



Ambivalent Sequence Predictor (ASP v1.0) mmy


Parameters:
	Window size	:	5
	Min mu dPr	:	9
	Z-score cutoff	:	-1.75

	Mean dPr score=13.815, Standard deviation=3.037

                  ....,....1....,....2....,....3....,....4....,....5....,....6
         AA      |MEALLVINAGSSSLKFQIFGIATAGLERQVRAKLDGIATQPRLKATAADGTELINRRLDA|
         prH sec |000000000027788988988889999987444421000024452111265764100147|
         prE sec |058999850000000000000000000000012210200000001100000000100000|
         prL sec |931000048962110000011100000011432367689975435778633124788852|
         ASP sec |...............................SSS..........................|

                  ....,....7....,....8....,....9....,....10...,....11...,....12
         AA      |TAVPDLPEALSVARDWLATLRGFDLRAIGHRVVHGGPDYVRPVLIETTVLDRLASYQDLA|
         prH sec |679999999968899887653010111000000000444365422368999999887763|
         prE sec |000000000000000001100116655566875300000101123100000000000000|
         prL sec |320000000031100101136872233333114699544533343420000000102235|
         ASP sec |........................................SSSSSS..............|

                  ....,....13...,....14...,....15...,....16...,....17...,....18
         AA      |PLHQPNNLAPIRLAMDIKPDVPQVACFDTAFHRGRTEHTDCYALPRTFYEQGVRRYGFHG|
         prH sec |320023236677563210000000000024531000333310111477654453223226|
         prE sec |000000000001322321000267888620000000001122211000000114542100|
         prL sec |678976763221113357999731101244457999655556676421234432124673|
         ASP sec |.............SSS...................................SSSSSS...|

                  ....,....19...,....20...,....21...,....22...,....23...,....24
         AA      |ISYEYIAGRLREVAPEVARGRVIVAHLGSGASMCALKDGRSVETTMGFTALDGLPMGTRP|
         prH sec |589999999999985542000000000014567773200000000001244321100011|
         prE sec |000000000000000000247999872000001123100058887321100000000000|
         prL sec |310000000000013457651000016985321002689841001566654567898988|
         ASP sec |............................................................|

                  ....,....25...,....26...,....27...,....28...,....29...,....30
         AA      |GQLDPGVVLHLLTDQGMSAQAVSDLLYHRSGLKGLSGISNDMRELLGSDDPRASFAIDHF|
         prH sec |001268899998875112699999986630000000002378997621014768999999|
         prE sec |000000000000000000000000000000025644321000000000000000000000|
         prL sec |987731000001124886300000002269863345565621002378985220000000|
         ASP sec |............................................................|

                  ....,....31...,....32...,....33...,....34...,....35...,....36
         AA      |VHRCALDAGMLAAALGGLDAFVFTAGIGENSAPIRARVSEGLAWLGAELDPAANDAGASV|
         prH sec |999987753223242100000000011333589999999999998776203541100000|
         prE sec |000000000154533000478987211000000000000000000001100000000146|
         prL sec |000001245521124888520002667656410000000000001211685347889852|
         ASP sec |.........SSSSS..............................................|

                  ....,....37...,....38...,....39...,....40...,....41...,....42
         AA      |ISKAGSRVALHVMPTDEELMIARHTLAIIRAR|
         prH sec |00000000000000089999999999999840|
         prE sec |63200278898610000000000000000000|
         prL sec |36788621001379910000000000000149|
         ASP sec |................................|


Please note: ASP was designed to identify the location of conformational 
switches in amino acid sequences. It is NOT designed to predict whether 
a given sequence does or does not contain a switch.  For best results,
ASP should be used on sequences of length >150 amino acids with >10 
sequence homologues in the SWISS-PROT data bank. 
ASP has been validated against a set of globular proteins and may not 
be generally applicable. Please see Young et al., Protein Science 
8(9):1852-64. 1999. for details and for how best to interpret this 
output.  We consider ASP to be experimental at this time, and would 
appreciate any feedback from our users.

END of results for file predict_h31733

Quotes for methods

PredictProtein: PredicProtein: B Rost (1996) Methods in Enzymology, 266:525-539
- Author: B Rost
- Contact: liu@cubic.bioc.columbia.edu
- Url: http://cubic.bioc.columbia.edu
- Version: 1.99.08
- Description: PredictProtein is the acronym for all prediction programs run.
ProSite: K Hofmann , P Bucher, L Falquet, A Bairoch:: The PROSITE database, its status in 1999. Nucleic Acids Res, 27, 215-219, 1999
- Author: Kay Hofmann, Philip Bucher, and Amos Bairoch (SIB, Geneva, Switzerland)
- Contact: Christian.Sigrist@isb-sib.ch
- Url: http://www.expasy.ch/prosite/
- Version: 99.07
- Description: PROSITE is a database of functional motifs. ScanProsite, finds all functional motifs in your sequence that are annotated in the ProSite db
SEG: J C Wootton, and S Federhen:: Analysis of compositionally biased regions in sequence databases. Methods in Enzymology, 266, 554-571, 1996
- Author: John C Wootton and Scott Federhen (NCBI, Washington)
- Contact: federhen@ncbi.nlm.nih.gov
- Url: http://trex.musc.edu/manuals/unix/seg.html
- Version: 1994
- Description: SEG divides sequences into regions of low-, and high-complexity. Low-complexity regions typically correspond to 'simple sequences' or 'compositionally-biased' regions
ProDom: F Corpet, F Servant, J Gouzy, and D Kahn:: ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons. Nucleic Acids Res, 28, 267-269, 2000
- Author: Florence Corpet, Florence Servant, Jerome Gouzy, and Daniel Kahn
- Contact: Jerome.Gouzy@toulouse.inra.fr
- Url: http://protein.toulouse.inra.fr/prodom.html
- Version: 2000.1
- Description: ProDom is a database of putative protein domains. The database is searched with BLAST for domains corresponding to your protein
MaxHom: C Sander, and R Schneider::Database of Homology-Derived Structures and the Structural Meaning of Sequence Alignment. Proteins, 9, 56-68, 1991
- Author: Reinhard Schneider (LION, Boston) and Chris Sander (Millenium, Boston)
- Contact: rost@columbia.edu
- Url: local
- Version: 1.99.04
- Description: MaxHom is a dynamic multiple sequence alignment program which finds similar sequences in a database.
MView: N P Brown, C Leroy, and C Sander:: MView: A Web compatible database search or multiple alignment viewer. Bioinformatics, 14, 380-381, 1998
- Author: Nigel Brown
- Contact: nbrown@nimr.mrc.ac.uk
- Url: http://mathbio.nimr.mrc.ac.uk/~nbrown/mview/
- Copyright: Copyright (C) Nigel P. Brown, 1997-1998. All rights reserved.
- Version: 1.40.2
- Description: MView is a program converting multiple sequence alignments into fancy HTML formatted output
PHD: B Rost:: PHD: predicting one-dimensional protein structure by profile based neural networks. Methods in Enzymology, 266, 525-539, 1996
- Author: Burkhard Rost (CUBIC, Columbia Univ, New York)
- Contact: rost@columbia.edu
- Url: http://cubic.bioc.columbia.edu/predictprotein
- Version: 1.96
- Description: PHD is a suite of programs predicting 1D structure (secondary structure, solvent accessibility) from multiple sequence alignments
PHDsec: B Rost & C Sander (1993) J. of Molecular Biology, 232:584-599
- Author: B Rost
- Url: http://cubic.bioc.columbia.edu
- Version: 1.96
- Description: PHDsec predicts secondary structure from multiple sequence alignments.
PHDacc: B Rost & C Sander (1994) Proteins, 20:216-226
- Url: rost@columbia.edu
- Version: 1.96
- Description: PHDacc predicts per residue solvent accessibility from multiple sequence alignments.
GLOBE: B Rost::Short yeast ORFs: expressed protein or not? unpublished, 2000
- Author: Burkhard Rost (CUBIC, Columbia Univ, New York)
- Contact: rost@columbia.edu
- Url: http://cubic.bioc.columbia.edu/predictprotein
- Version: 1.98.05
- Description: GLOBE predicts the globularity of a protein
ASP: Young et al.:: Protein Science(1999) 8:1752-64.
- Author: Malin Young (Sandia National Laboratory), Kent Kirshenbaum(Caltech), and Stefan Highsmith
- Contact: mmyoung@sandia.gov; kent@cheme.caltech.edu; shighsmith@sf.uop.edu
- Version: 1.0
- Description: ASP finds regions that are most likely to behave as switches in proteins known to exhibit this behavior

Links:

TOP

%A: 13.5	%C: 1.0	%D: 6.9	%E: 4.3	%F: 3.1
%G: 9.4	%H: 3.3	%I: 5.1	%K: 1.8	%L: 11.7
%M: 2.5	%N: 1.8	%P: 4.8	%Q: 2.5	%R: 8.4
%S: 5.4	%T: 5.1	%V: 6.6	%W: 0.5	%Y: 2.0

AA :	amino acid sequence
PHD_sec:	PHD predicted secondary structure: H=helix, E=extended (sheet), blank=other (loop) PHD = PHD: Profile network prediction HeiDelberg
Rel_sec:	reliability index for PHDsec prediction (0=low to 9=high) Note: for the brief presentation strong predictions marked by '*'
SUB_sec:	subset of the PHDsec prediction, for all residues with an expected average accuracy > 82% (tables in header) NOTE: for this subset the following symbols are used: L: is loop (for which above ' ' is used) .: means that no prediction is made for this residue, as the reliability is: Rel < 5

pH_sec:	'probability' for assigning helix (1=high, 0=low)
pE_sec:	'probability' for assigning strand (1=high, 0=low)
pL_sec:	'probability' for assigning neither helix, nor strand (1=high, 0=low)
P_3_acc:	PHD predicted relative solvent accessibility (acc) in 3 states: b = 0-9%, i = 9-36%, e = 36-100%.
Rel_acc:	reliability index for PHDacc prediction (0=low to 9=high) Note: for the brief presentation strong predictions marked by '*'
SUB_acc:	subset of the PHDacc prediction, for all residues with an expected average correlation > 0.69 (tables in header) NOTE: for this subset the following symbols are used: I: is intermediate (for which above ' ' is used) .: means that no prediction is made for this residue, as the reliability is: Rel < 4

PHD_acc:	PHD predicted relative solvent accessibility (acc) in 10 states: a value of n (=0-9) corresponds to a relative acc. of between nn % and (n+1)(n+1) % (e.g. for n=5: 16-25%).