# PRIMER: STEP 5 # # This script should produce two models, topi.B999901 and topi.B999902. # # Before you run this script, do this: ln alignment.seg.ali fer2.ali # INCLUDE # Include the predefined TOP routines SET ALNFILE = 'final.pir' # alignment filename SET KNOWNS = '1g99A.pdb' # codes of the templates SET SEQUENCE = 'predict_h3170' # code of the target SET ATOM_FILES_DIRECTORY = './' # directories for input atom files SET STARTING_MODEL= 1 # index of the first model SET ENDING_MODEL = 2 # index of the last model # (determines how many models to calculate) SET DEVIATION = 2.0 # have to be >0 if more than 1 model SET RAND_SEED = -12312 # to have different models from another TOP file CALL ROUTINE = 'model' # do homology modelling