# STOCKHOLM 1.0
#=GF AU    HMMER 2.2g

#=GS tr|Q9HIK0   AC    Cell-cycle regulation histidine triad (HIT) related protein - Thermoplasma acidophilum.

1av5A              ...--G-GDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPK
1emsex.pdb         ...GGLKFAR--FN----IPADHIFYSTPHSFVFVNLKPVTDGHVLVSPK
1kpaA              ...--G-GDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPK
2-fitex.pdb        ...-SFRFGQ--HL----IKPSVVFLKTELSFALVNRKPVVPGHVLVCPL
4-fitex.pdb        ...-SFRFGQ--HL----IKPSVVFLKTELSFALVNRKPVVPGHVLVCPL
4rhn               ...RPG-GDTIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPK
6rhn               ...RPG-GDTIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPK
tr|Q9HIK0          ikc---KFCD----IISGKTASEIVYSDENFVAFLDYKPLFKGHTLLVPR
#=GC RF            ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

1av5A              KHISQISVAEDDDESLLGHLMIVGKKC-AADLGLNKGYRMVVNEGSDGGQ
1emsex.pdb         RVVPRLTDLTDAETADLFIVAKKVQAMLEKHHN-VTSTTICVQDGKDAGQ
1kpaA              KHISQISVAEDDDESLLGHLMIVGKKC-AADLGLNKGYRMVVNEGSDGGQ
2-fitex.pdb        RPVERFHDLRPDEVADLFQTTQRVGTVVEKHFH-GTSLTF-SQDGPEAGQ
4-fitex.pdb        RPVERFHDLRPDEVADLFQTTQRVGTVVEKHFH-GTSLTFSMQDGPEAGQ
4rhn               KHISQISAAEDADESLLGHLMIVGKKC-AADLGLKKGYRMVVNEGSDGGQ
6rhn               KHISQISAAEDADESLLGHLMIVGKKC-AADLGLKKGYRMVVNEGSDGGQ
tr|Q9HIK0          KHFADIYAMDDLTLSKMMKTVTIISMAVERATG-SDGTFIAINN--KVSQ
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

1av5A              SVYHVHLHV-LGG.....R-QMHWPPG..
1emsex.pdb         TVPHVHIHILPRR.....AG-DF--PRs.
1kpaA              SVYHVHLHV-LGG.....R-QMHWPPG..
2-fitex.pdb        TVKHVHVHVLPRK.....AGDFHFPAS..
4-fitex.pdb        TVKHVHVHVLPRK.....AG-DF-SWRse
4rhn               SVYHVHLHV-LGG.....R-QMNWPPG..
6rhn               SVYHVHLHV-LGG.....R-QMNWPPG..
tr|Q9HIK0          SVPHVHVHIVPRKhkdglKG-FFWPRQ..
#=GC RF            xxxxxxxxxxxxx.....xxxxxxxxx..
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