./2hhba.pdb 2hhba { CHAIN A 0.99090 -0.04632 0.12634 -2.28363 0.04050 0.99801 0.04824 -0.25737 -0.12833 -0.04269 0.99081 2.08336 } ./2hhbb.pdb 2hhbb { CHAIN B 0.99104 -0.04488 0.12581 -2.28541 0.03924 0.99813 0.04696 -0.19887 -0.12769 -0.04161 0.99094 2.10994 } Alignment score Sc = 8.188291 Alignment length Lp = 147 RMS deviation after fitting on 133 atoms = 1.400723 Secondary structures are from DSSP >2hhba (cluster A) sequence >2hhbb (cluster B) sequence >space >2hhba_dssp (cluster A) secondary structure from DSSP >2hhbb_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value AB ABequiv Pij Distance Pij' * iteration 1 V ? VH ?? 1 0.60700 1.79824 6.27000 LL ?? 1 0.65200 1.69805 6.72000 ST ?? 1 0.67700 1.73179 6.97000 PP ?? 1 0.71400 1.66638 7.34000 AE ?? 1 0.72900 1.62871 7.49000 DE ?? 1 0.74800 1.54246 7.68000 KK ?? 1 0.83100 1.25554 8.51000 TS ?? 1 0.84100 1.27881 8.61000 NA ?? 1 0.83400 1.33489 8.54000 VV ?? 1 0.87300 1.12543 8.93000 KT ?? 1 0.91200 0.89024 9.32000 AA ?? 1 0.88800 1.14315 9.08000 AL ?? 1 0.87200 1.20974 8.92000 WW ?? 1 0.91000 0.93062 9.30000 GG ?? 1 0.87900 1.13485 8.99000 K ? VK ?? 1 0.54500 1.79365 5.65000 GV ?? 1 0.54300 1.89195 5.63000 A ? HN ?? 0 0.36800 1.02417 3.88000 AV ?? 1 0.86400 0.92856 8.84000 GD ?? 1 0.84600 1.10518 8.66000 EE ?? 1 0.90800 0.87370 9.28000 YV ?? 1 0.91700 0.70356 9.37000 GG ?? 1 0.90800 0.91736 9.28000 AG ?? 1 0.90700 0.89983 9.27000 EE ?? 1 0.92200 0.72575 9.42000 AA ?? 1 0.92900 0.88059 9.49000 LL ?? 1 0.91200 1.05048 9.32000 EG ?? 1 0.89800 1.09613 9.18000 RR ?? 1 0.91200 0.95429 9.32000 ML ?? 1 0.90700 1.05664 9.27000 FL ?? 1 0.92100 1.02547 9.41000 LV ?? 1 0.91400 1.05376 9.34000 SV ?? 1 0.93200 0.90686 9.52000 FY ?? 1 0.93500 0.82461 9.55000 PP ?? 1 0.92100 0.90117 9.41000 TW ?? 1 0.91200 1.01401 9.32000 TT ?? 1 0.93100 0.91101 9.51000 KQ ?? 1 0.93000 0.90549 9.50000 TR ?? 1 0.89300 1.05715 9.13000 YF ?? 1 0.81600 1.34985 8.36000 FF ?? 1 0.86000 1.19186 8.80000 PE ?? 1 0.81800 1.38949 8.38000 HS ?? 1 0.86400 1.25827 8.84000 FF ?? 1 0.79500 1.17995 8.15000 G ? DD ?? 0 0.41200 2.07359 4.32000 L ? S ? T ? P ? D ? LA ?? 0 -0.00000 2.49801 0.01000 SV ?? 0 0.32300 1.81509 3.43000 HM ?? 1 0.63300 1.72266 6.53000 GG ?? 1 0.77300 1.34150 7.93000 SN ?? 1 0.82500 1.33520 8.45000 AP ?? 1 0.80800 1.33498 8.28000 QK ?? 1 0.89100 0.91614 9.11000 VV ?? 1 0.91700 0.96269 9.37000 KK ?? 1 0.89200 1.07892 9.12000 GA ?? 1 0.92000 0.89229 9.40000 HH ?? 1 0.92600 0.81649 9.46000 GG ?? 1 0.90200 1.01322 9.22000 KK ?? 1 0.91000 0.95971 9.30000 KK ?? 1 0.91000 0.77098 9.30000 VV ?? 1 0.85700 1.09168 8.77000 AL ?? 1 0.82600 1.16533 8.46000 DG ?? 1 0.87000 0.84874 8.90000 AA ?? 1 0.88900 0.84797 9.09000 LF ?? 1 0.86600 1.09366 8.86000 TS ?? 1 0.90100 0.95970 9.21000 ND ?? 1 0.91000 0.79661 9.30000 AG ?? 1 0.89500 0.87948 9.15000 VL ?? 1 0.91600 0.86265 9.36000 AA ?? 1 0.90500 1.07566 9.25000 HH ?? 1 0.88800 1.19238 9.08000 VL ?? 1 0.90000 1.13011 9.20000 DD ?? 1 0.87100 1.17964 8.91000 DN ?? 1 0.79900 1.42800 8.19000 ML ?? 1 0.86100 1.27572 8.81000 PK ?? 1 0.82600 1.37690 8.46000 NG ?? 1 0.77700 1.49812 7.97000 AT ?? 1 0.82800 1.38169 8.48000 LF ?? 1 0.81300 1.42358 8.33000 SA ?? 1 0.72100 1.59107 7.41000 AT ?? 1 0.69600 1.58860 7.16000 LL ?? 1 0.82100 1.16812 8.41000 SS ?? 1 0.84500 1.22713 8.65000 DE ?? 1 0.82100 1.34502 8.41000 LL ?? 1 0.82800 1.14796 8.48000 HH ?? 1 0.82200 1.05426 8.42000 AC ?? 1 0.75700 1.43600 7.77000 HD ?? 1 0.83000 1.22829 8.50000 KK ?? 1 0.87800 1.07267 8.98000 LL ?? 1 0.85800 1.13814 8.78000 RH ?? 1 0.72800 1.43583 7.48000 VV ?? 1 0.83700 1.10165 8.57000 DD ?? 1 0.89200 1.02902 9.12000 PP ?? 1 0.81700 1.37030 8.37000 VE ?? 1 0.86700 1.26494 8.87000 NN ?? 1 0.87400 1.26328 8.94000 FF ?? 1 0.87200 1.22842 8.92000 KR ?? 1 0.83500 1.29836 8.55000 LL ?? 1 0.88900 1.06368 9.09000 LL ?? 1 0.92500 0.95265 9.45000 SG ?? 1 0.91900 0.97311 9.39000 HN ?? 1 0.89400 1.07911 9.14000 CV ?? 1 0.92000 0.93197 9.40000 LL ?? 1 0.94200 0.80868 9.62000 LV ?? 1 0.94000 0.83156 9.60000 VC ?? 1 0.93100 0.91772 9.51000 TV ?? 1 0.93300 0.90995 9.53000 LL ?? 1 0.94200 0.78576 9.62000 AA ?? 1 0.94300 0.78143 9.63000 AH ?? 1 0.93400 0.89320 9.54000 HH ?? 1 0.91700 0.86921 9.37000 LF ?? 1 0.84000 1.01788 8.60000 PG ?? 1 0.63100 1.40495 6.51000 AK ?? 0 0.36000 2.03661 3.80000 EE ?? 1 0.56900 1.57426 5.89000 FF ?? 1 0.80800 0.58764 8.28000 TT ?? 1 0.94400 0.75632 9.64000 PP ?? 1 0.94200 0.70192 9.62000 AP ?? 1 0.94900 0.52268 9.69000 VV ?? 1 0.94900 0.59007 9.69000 HQ ?? 1 0.94700 0.58070 9.67000 AA ?? 1 0.94800 0.71187 9.68000 SA ?? 1 0.94900 0.71186 9.69000 LY ?? 1 0.94000 0.64409 9.60000 DQ ?? 1 0.90600 0.99566 9.26000 KK ?? 1 0.89600 1.00294 9.16000 FV ?? 1 0.93200 0.59869 9.52000 LV ?? 1 0.95200 0.60584 9.72000 AA ?? 1 0.95200 0.60188 9.72000 SG ?? 1 0.95500 0.46307 9.75000 VV ?? 1 0.95700 0.46119 9.77000 SA ?? 1 0.95700 0.47809 9.77000 TN ?? 1 0.95700 0.45760 9.77000 VA ?? 1 0.95600 0.45986 9.76000 LL ?? 1 0.95400 0.54064 9.74000 TA ?? 1 0.95300 0.62192 9.73000 SH ?? 1 0.95400 0.55812 9.74000 KK ?? 1 0.95400 0.53070 9.74000 YY ?? 1 0.88300 0.46903 9.03000 RH ?? 1 0.80100 1.28678 8.21000 *