# STOCKHOLM 1.0
#=GF AU    HMMER 2.2g

#=GS sp|P11018|ISP1_BACSU AC    Major intracellular serine protease (EC 3.4.21.-) (ISP-1) - Bacillus subtilis.

sp|P11018|ISP1_BACSU        mngeirlipyvtneqimdVNELPEGIKVIKAPEMWAKGVKGKNIKVAVLD
1a2q                        ..................AQSVPYGVSQIKAPALHSQGYCGSNVKVAVID
1sbh                        ..................AQSVPYGVSQIKAPALHSQGYTGSNVKVAVID
1sca                        ..................AQTVPYGIPLIKADKVQAQGFKGANVKVAVLD
1svn                        ..................AQSVPWGISRVQAPAAHNRGLTGSGVKVAVLD
3vsb                        ..................AQTVPYGIPLIKADKVQAQGFKGANVKVAVLD
#=GC RF                     ..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

sp|P11018|ISP1_BACSU        TGCDTSHPDLKnqIIGGKNFTdddGGKEDAISDYNGHGTHVAGTIAANDS
1a2q                        SGIDSSHPDLK..VAGGASMV...PSETNPFQDNNSHGTHVAGTVAALNN
1sbh                        SGIDSSHPDLK..VAGGASFV...PSETNPFQDNNSHGTHVAGTVAALDN
1sca                        TGIQASHPDLN..VVGGASFV...AG-EAYNTDGNGHGTHVAGTVAALDN
1svn                        TGIS-THPDLN..IRGGASFV...PGEPS-TQDGNGHGTHVAGTIAALNN
3vsb                        TGIQASHPDLN..VVGGASFV...AG-EAYNTDGNGHGTHVAGTVAALDN
#=GC RF                     xxxxxxxxxxx..xxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxx

sp|P11018|ISP1_BACSU        NGGIAGVAPEASLLIVKVLGGEnGSGQYEWIINGINYAVEQKVDIISMSL
1a2q                        SIGVLGVAPCASLYAVKVLGAD.GSGQYSWIINGIEWAIANNMDVINMSL
1sbh                        SIGVLGVAPSASLYAVKVLGAD.GSGQYSWIINGIEWAIANNMDVINMSL
1sca                        TTGVLGVAPSVSLYAVKVLNSS.GSGSYSGIVSGIEWATTNGMDVINMSL
1svn                        SIGVLGVAPSAELYAVKVLGAS.GSGSVSSIAQGLEWAGNNGMHVANLSL
3vsb                        TTGVLGVAPSVSLYAVKVLNSS.GSGSYSGIVSGIEWATTNGMDVINMSL
#=GC RF                     xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx

sp|P11018|ISP1_BACSU        GGPSDVPELKEAVKNAVKNGVLVVCAAGNEG-DGDERTeeLSYPAAYNEV
1a2q                        GGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSST..VGYPAKYPSV
1sbh                        GGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSST..VGYPAKYPSV
1sca                        GGASGSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNT..IGYPAKYDSV
1svn                        GSPSPSATLEQAVNSATSRGVLVVAASGNSG--A--GS..ISYPARYANA
3vsb                        GGASGSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNT..IGYPAKYDSV
#=GC RF                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx

sp|P11018|ISP1_BACSU        IAVGSVSVARELSEFSNANKEIDLVAPGENILSTLPNKKYGKLTGTSMAA
1a2q                        IAVGAVDSSNQRASFSSVGPELDVMAPGVSIQSTLPGNKYGAYSG-TMAS
1sbh                        IAVGAVDSSNQRASFSSVGPELDVMAPGVSICSTLPGNKYGAYSGTSMAS
1sca                        IAVGAVDSNSNRASFSSVGAELEVMAPGAGVYSTYPTNTYATLNGTSMAS
1svn                        MAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASLNGTSMAT
3vsb                        IAVGAVDSNSNRASFSSVGAELEVMAPGAGVYSTYPTNTYATLNG-TMAS
#=GC RF                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

sp|P11018|ISP1_BACSU        PHVSGALALIKSYEEEsfqrkLSESEVFAQLIRRTLPL..DIAkTLAGNG
1a2q                        PHVAGAAALILSKHPN.....WTNTQVRSSLENTTTKLlgGDS.FYYGKG
1sbh                        PHVAGAAALILSKHPN.....WTNTQVRSSLENTTTYL..GDS.FYYGKG
1sca                        PHVAGAAALILSKHPN.....LSASQVRNRLSSTATYL..GSS.FYYGKG
1svn                        PHVAGAAALVKQKNPS.....WSNVQIRNHLKNTATSL..GST.NLYGSG
3vsb                        PHVAGAAALILSKHPN.....LSASQVRNRLSSTATYL..GSS.FYYGKG
#=GC RF                     xxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxx..xxx.xxxxxx

sp|P11018|ISP1_BACSU        FLYLTAPDElaekaeqshlltl
1a2q                        LINVQAAAQ.............
1sbh                        LINVQAAAQ.............
1sca                        LINVEAAAQ.............
1svn                        LVNAEAATR.............
3vsb                        LINVEAAAQ.............
#=GC RF                     xxxxxxxxx.............
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